LOCUS       NM_029949               1433 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus small nuclear RNA activating complex, polypeptide 3
            (Snapc3), transcript variant 1, mRNA.
ACCESSION   NM_029949 NM_026299 XR_104867 XR_107618
VERSION     NM_029949.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1433)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1433)
  AUTHORS   Sutherland,H.G., Newton,K., Brownstein,D.G., Holmes,M.C., Kress,C.,
            Semple,C.A. and Bickmore,W.A.
  TITLE     Disruption of Ledgf/Psip1 results in perinatal mortality and
            homeotic skeletal transformations
  JOURNAL   Mol Cell Biol 26 (19), 7201-7210 (2006)
   PUBMED   16980622
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK049933.1 and BC048713.1.
            
            On Dec 9, 2017 this sequence version replaced NM_029949.3.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048713.1, AK007563.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                AK049933.1         2-21
            21-1433             BC048713.1         1-1413
FEATURES             Location/Qualifiers
     source          1..1433
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 39.46 cM"
     gene            1..1433
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /note="small nuclear RNA activating complex, polypeptide
                     3"
                     /db_xref="GeneID:77634"
                     /db_xref="MGI:MGI:1916338"
     exon            1..331
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..1253
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     snRNA-activating protein complex subunit 3; SNAPc subunit
                     3"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 3
                     isoform 1"
                     /protein_id="NP_084225.1"
                     /db_xref="CCDS:CCDS38792.1"
                     /db_xref="GeneID:77634"
                     /db_xref="MGI:MGI:1916338"
                     /translation="MAEDLQGGGAGGPQHPVPSASHSSFPEYELPELHTRVFHVGSFG
                     ELWRGRLGAQDLSLSEPQAAEQPTDGGASNDGFEDAAVASDLGCSLEAAAELRVVCGL
                     DKLRCLGEDEDPEVIPENTDLVTLCVRKGLLDYREENITIDRACRQEIFAYEMESHAL
                     GKKPENPADMIEEGECILSVNILYPVIFNKHKEHKPYQTMLVLGSQKLTELRDSICCV
                     SDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSRTIIEWSES
                     HDRGYGKFQTARMEDFTFNDLHIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRT
                     LYPLLTKKHWLWTRKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCFRMLHYDSEGNKL
                     GEFLAYPYVDPGTFN"
     exon            332..409
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            410..494
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            495..599
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            600..749
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            750..832
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            833..997
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1105
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1405
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1383..1388
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1405
                     /gene="Snapc3"
                     /gene_synonym="1810020H02Rik; 4930558A07Rik;
                     5031401C21Rik; E030018J20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcttttgcc ggaagggatc gtggctgaca tggcggagga cctgcagggc ggcggtgcgg
       61 gtggcccaca gcacccagtc cccagtgcga gccacagcag ctttccggaa tacgagcttc
      121 ccgagttgca cacgcgcgtg ttccatgtgg gctcctttgg ggagctatgg cgtggccggc
      181 taggggccca ggatttgtcg ctgagcgaac cgcaggcagc cgagcagccg accgacggag
      241 gggcatccaa cgacggcttt gaggatgctg cagtagccag cgatctgggc tgcagtctgg
      301 aggcagcagc agagctgagg gtcgtgtgcg gccttgataa actgagatgc ctcggggaag
      361 atgaagaccc ggaagtcatc ccagagaaca ctgacctagt gactttatgt gtgaggaagg
      421 ggcttttgga ctatcgggaa gaaaacatca caatagatcg cgcctgtaga caagaaatat
      481 ttgcttatga aatggaatct catgcactag ggaagaaacc tgaaaaccca gcagacatga
      541 ttgaagaagg agagtgtatc ctatctgtga acatcttata tcctgttata tttaataagc
      601 acaaagaaca caaaccatac cagaccatgt tggtactggg cagtcagaag ctcacagaac
      661 tgagagattc aatttgctgt gtcagtgacc tccagatcgg tggagaattc agcaacgcgc
      721 cagaccaagc ccctgagcac atcagcaaag acctctacaa gtcggctttt ttctattttg
      781 aaggaacatt ttacaatgac agaagatacc cagaatgcag agacttgagc agaactatta
      841 tagagtggtc agagtcccat gatcgaggat atggaaaatt tcagactgct agaatggaag
      901 atttcacatt taatgacttg catattaaac ttggctttcc ttacttatac tgtcaccagg
      961 gagactgtga gcatgttgtt gtcatcacag acataaggct tgtgcaccat gacgactgct
     1021 tggatagaac actgtatccc cttcttacca agaagcactg gctgtggacc agaaaatgtt
     1081 ttgtctgtaa gatgtataca gctagatggg tgacgaacaa tgacaccttt gcaccagagg
     1141 acccatgttt cttttgtgat gtttgcttca gaatgctcca ctatgattcc gaaggcaaca
     1201 aactagggga attccttgct tatccttatg ttgacccagg aacctttaat tagtaccaga
     1261 tatttcctac tacagcttag ttaattacta ttacattatt tattacaagg ggttgttaat
     1321 ggcgttttac ttaagttgtt tatgttactg agatgtagaa atgcttttct gtattttgaa
     1381 tatataaacc ttgtcggaaa cacaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
