LOCUS       NM_021535               3273 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus smu-1 suppressor of mec-8 and unc-52 homolog (C.
            elegans) (Smu1), mRNA.
ACCESSION   NM_021535
VERSION     NM_021535.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3273)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   2  (bases 1 to 3273)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   3  (bases 1 to 3273)
  AUTHORS   Powles,N., Babbs,C., Ficker,M., Schimmang,T. and Maconochie,M.
  TITLE     Identification and analysis of genes from the mouse otic vesicle
            and their association with developmental subprocesses through in
            situ hybridization
  JOURNAL   Dev Biol 268 (1), 24-38 (2004)
   PUBMED   15031102
REFERENCE   4  (bases 1 to 3273)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY036103.1, AK168813.1, AK145982.1 and AK163758.1.
            
            On Apr 23, 2009 this sequence version replaced NM_021535.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019174.1, AK145982.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                BY036103.1         3-12
            11-1804             AK168813.1         5-1798
            1805-2308           AK145982.1         1804-2307
            2309-3273           AK163758.1         1774-2738           c
FEATURES             Location/Qualifiers
     source          1..3273
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 20.46 cM"
     gene            1..3273
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="smu-1 suppressor of mec-8 and unc-52 homolog (C.
                     elegans)"
                     /db_xref="GeneID:74255"
                     /db_xref="MGI:MGI:1915546"
     exon            1..109
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            110..320
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            321..473
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            474..584
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            585..713
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            714..833
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            834..950
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1078
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1205
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1373
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1526
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..3273
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1784..1789
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="hexamer: AATAAA"
     polyA_site      1805
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="major polyA site"
     regulatory      2291..2296
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="hexamer: AAGAAA"
     polyA_site      2309
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
     regulatory      2346..2351
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="hexamer: AAGAAA"
     regulatory      2364..2369
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
                     /note="hexamer: AACAAA"
     polyA_site      2370
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
     polyA_site      2382
                     /gene="Smu1"
                     /gene_synonym="2600001O03Rik; 2610203K23Rik; Bwd"
ORIGIN      
        1 gcagcgcggc cgccggaagt gtcgcgcggc gttgtgcgac cggctgtgtg ctgagtgggg
       61 cctggacccg gagcgttacc gctatgtcga tcgaaatcga gtcttccgat gtgatccgac
      121 taatcatgca gtacttgaag gagaacagtt tacatcgggc actggccacc ttacaggagg
      181 aaactactgt ctctctgaat actgtggaca gcattgaaag tttcgtggct gatattaata
      241 gtggccattg ggatactgtt ttacaggcta tacagtctct gaaattgcca gacaaaaccc
      301 ttattgatct ctatgaacag gttgttttgg aattgataga gcttcgtgaa ttgggtgctg
      361 ccaggtcact tctgagacag actgacccca tgattatgtt aaagcaaaca caaccagagc
      421 gctatattca tctggaaaac ctcttagcta gatcttactt tgatcctcgt gaggcatatc
      481 cagatggaag tagcaaagag aaaaggagag cagcgattgc ccaggcttta gctggggaag
      541 tcagcgtggt gccaccttct cgtctcatgg cattgctggg acaggcattg aagtggcagc
      601 agcaccaggg attgcttcct cctggtatga ccatcgattt gtttcgaggc aaggcagctg
      661 tcaaagatgt ggaagaagag aagtttccaa cacagttgag caggcatatt aagtttggac
      721 agaagtccca cgtggagtgt gctcggttct ctccagatgg tcagtatctg gtcactggct
      781 ctgttgatgg atttattgag gtgtggaact tcactacagg gaaaatcagg aaggatctga
      841 agtaccaggc ccaggataac ttcatgatga tggatgatgc tgttctctgc atgtgtttca
      901 gcagagatac tgaaatgtta gcaactgggg cccaagatgg aaagatcaag gtttggaaga
      961 ttcagagtgg acagtgtttg agaagatttg aaagggcaca tagtaaaggt gtcacctgtc
     1021 taagcttttc caaggacagc agtcagatcc tcagtgcttc ttttgaccag acaatacgaa
     1081 ttcatggttt aaaatctgga aaaaccctga aggaatttcg aggccattcc tcctttgtta
     1141 atgaagcaac gtttacacag gatggacatt acattatcag tgcgtcctct gatggcactg
     1201 tgaagatctg gaatatgaag accacagaat gctcaaatac ctttaagtcc ctgggcagta
     1261 ctgcagggac agatattaca gtcaacagtg tgattctgct tcctaaaaac ccagagcact
     1321 tcgttgtgtg taaccgatcg aacacagtgg tcatcatgaa catgcagggc cagatcgtca
     1381 gaagcttcag ttctggtaaa agagagggtg gtgactttgt ttgctgtgcc ttgtcccctc
     1441 gtggcgagtg gatctactgt gttggggagg actttgtgct ctactgcttc agcacagtca
     1501 ctggcaagct ggagagaacg ctgacggttc atgagaagga tgtgattgga atcgcacacc
     1561 acccgcacca gaatttgatt gccacctaca gtgaagatgg cctcctgaag ctctggaaac
     1621 cctaagtcag cctttacggt gcagcccagg agcatgtact taagtgcagg gcatggccat
     1681 gtattccgac tacttttcca tgtctgcgtc ctagcataaa acttgtaaat aagtcagtgt
     1741 gatgtattga ggagcttcgg attgattctt ttaaaaagat tttaataaac ttaaaccttt
     1801 ctttaccata agtgctcata agggggaggg agagtcgcta tccttgatcc tccagtctgg
     1861 tagtgagtgt aaaacagact aatatgaaac aggcttggtg acacacacag attctaatta
     1921 gtatttcaga aaaagttttt cttctagaaa tatcagtatt tcaaatcttt ggtagattag
     1981 tgaaaacatt agtgactacc ccagttaaaa acagataaac taatgatgcc tttaagatgc
     2041 tttaaatggt aacttcctta aacaggaatt ttcataaaat tattgtggct cagtcagaca
     2101 atatatttgc ttaggaaggc agacatgaaa aagtttttgc tctcttgtca gcctcctcat
     2161 tctgctcttt atgttcagcc ctgctcttgt attccagttt gaacaagtta gagggtttat
     2221 gggatttgat gcttgggtgc ctttctttcc tatgtagagg aggatttaat actgaaaatg
     2281 tactgttgta aagaaaaact agaaaagcac tccagtctct tatgtatata ttttttagtg
     2341 aactaaagaa aaactgttct gtcaacaaaa tccttgaaaa taggttccat gttgatgtcc
     2401 tttacattta aaccaaggct acagagagag catttataat gagcatacta tgctaggctg
     2461 tatcaagaaa ggctgtcttc tcctaggctt aaaaatttta aggattattt atgcatgtga
     2521 gtgcactgtt gctgtcttta gacacaccag aagaggacat tggatccatt acagatggtt
     2581 gtggttgctg ggatttgaac ttaggacctt tggaagagca atcactgctc ttaatcactg
     2641 agccatcttt ccagccttct cctaggcttt ttattgagaa agtcattacc aaatttcaca
     2701 tttggggctg gggctgtagc tctctcgatt gcatgcatgt tttggtttga ttggcagttg
     2761 gggggggggg cggaaacagg aagaccaaaa tttcaaggta gctctatagt aagttcaagg
     2821 ccagcctggt ctacaaataa ggacagccag gctgttaaca cagagaaact ggtcttaaaa
     2881 atccaaaaga aaaaaaaagt tttaagatca atctggtctg tacagggagc ccttgtcctt
     2941 gtctgccccc aagagtcaga gcttggcaaa ttagacatac gcctttaatt gcagcacttg
     3001 caaagttgag gcacaatcag ttttaagacc agctagggct gcattgtaag atcttgtctc
     3061 aaaacaaaac aggaactata caatgtggta ttccagtaag ctaagtatgg gacaaactag
     3121 tagtgttttt agttgctggt atagctatgt accactatac ttgggaaagt cttagaagac
     3181 caccttgttc attcttcagc aatatttgga aggaacctct aaaagactga cctttcttaa
     3241 gccccacata gcttcagctg agggaccctc cta
//
