LOCUS       XM_036160179            3821 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sphingomyelin phosphodiesterase 4 (Smpd4),
            transcript variant X4, mRNA.
ACCESSION   XM_036160179
VERSION     XM_036160179.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..3821
                     /gene="Smpd4"
                     /gene_synonym="4122402O22Rik"
                     /note="sphingomyelin phosphodiesterase 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 mRNAs, 42 ESTs, 1517 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:77626"
                     /db_xref="MGI:MGI:1924876"
     CDS             325..2796
                     /gene="Smpd4"
                     /gene_synonym="4122402O22Rik"
                     /codon_start=1
                     /product="sphingomyelin phosphodiesterase 4 isoform X3"
                     /protein_id="XP_036016072.1"
                     /db_xref="GeneID:77626"
                     /db_xref="MGI:MGI:1924876"
                     /translation="MAFPHLQQPSFLLASLKADSINKPFAQRCQDLVKVIEDFPAKEL
                     HAVFPWLVESIFGSLDGVLVGWNLRCLQGRVNPVEYSTAMEFLDPSGPMMKLVYKLQA
                     EDYNFDFPVSCLPGPVKASIQENVLPDSPLYHNKVQFPPTGGLGLNLALNPFEYYMFY
                     FALSLISQKPMSMTLHVRTSDCAYFTLVDRYLSWFLPTEGSVPPPLCSSPGGSSPSPA
                     PRTPAMPFASYGLHTSLLKRHISHQTSVNADPASHEIWRSETLLQVFVEMWLHHYSLE
                     MYQKMQSPHAKLEVLHYRLTVSSALHSPAQPSLQALHAYQESFTPTEEHVLVVRLLLK
                     HLHAFANSLKPDQASPSAHSHATSPLEEFKRAAVPRFVQQKLYVFLQHCFGHWPLDAT
                     FRAVLEMWLSYLQPWRYAPEKQAQGSDPQPRCVSEKWAPFIQENLLMYTKLFVSFLNR
                     ALRTDLVSPKNALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELIIPHRQHRLFTVTTS
                     FLSPWPPVVTDASFKVKSHVYSLEGQDCKYTPMFGPEIRTLVLRLAQLITQAKQTAKS
                     ISDQYVESPTGRSFLSWLTFGLTDTNSCYPANDLDEIGQDSIRKTDEYLEKALEYLRQ
                     IFRLSEAQLAQLTLALGSARDENGKQQLPDCIVGEEGLILTPLGRYQIINGLRRFEIE
                     YQGDLELQPIRSYEITSLVRALFRLSSAINRRFAGQMAALCSRNDFLGSFCRYHLTEP
                     ALSNRHLLSPVGRRQVTNPARGPRLSLRFLGSYRTLLLLLMAFFVASLFCIGPLSCSL
                     LLVLGYVLYAIAMTLLTERGKLHQL"
ORIGIN      
        1 gttttctcgg gtccccgccg aggctggctc cgttcctcct cgagctgtgg gggacttggg
       61 cctcccgaca gctcggcctg tacggggccg gccgggagcc cagggcccgg ctgcaacctc
      121 acgccgctct ccagggtcat ggctttctgc cgccttcctg cgtggtcctc gcagacggtc
      181 cgggcactgg gaggtaggaa gctgcagggc tatgcctaat ttttggtgac acgagatttg
      241 taaggagttt gctagactct tggctctgct gattgctagt ggttccctaa ggcagccgtt
      301 tcttgccggc cctgggagtc tgctatggcg ttccctcacc tacaacagcc tagtttcctt
      361 ctggctagcc tgaaagctga ctctataaat aagccctttg cacaacgttg ccaagatttg
      421 gtgaaagtca ttgaggattt tccagccaag gaattgcatg ccgtcttccc atggctggtg
      481 gaaagcatct ttggcagcct ggatggtgtc cttgttggtt ggaatctccg atgcctacag
      541 ggacgtgtga accctgtgga gtacagcaca gcgatggaat ttctagaccc aagtggtcca
      601 atgatgaagt tggtttataa acttcaagct gaagactata actttgattt tcctgtctcc
      661 tgtcttcctg gccctgtgaa ggcatccatt caagagaatg tcctccctga cagtcctctg
      721 taccacaaca aagtccagtt tcccccgacc ggaggccttg gcctgaacct ggccctcaat
      781 ccatttgaat actatatgtt ctactttgct ttgagcctca tctctcaaaa gccaatgtct
      841 atgaccctcc atgtccgtac ttcggactgt gcctatttca ccctggtgga taggtaccta
      901 tcatggttcc tacccactga aggcagcgta cctccaccac tctgctccag tccaggaggc
      961 tccagcccct caccagctcc cagaacacca gccatgccct ttgcctccta tggcctccac
     1021 actagcctct tgaagcgaca catctctcat cagacatctg tgaatgcaga ccctgcatcc
     1081 catgagatct ggcggtcaga aactctcctc caggtttttg tggaaatgtg gcttcatcat
     1141 tactccctgg agatgtacca aaaaatgcag tcccctcatg ccaagttgga ggttctacac
     1201 taccgactca ctgtctccag cgccctccac agccctgccc aacccagcct ccaggccctc
     1261 cacgcctacc aagagtcctt cacgcctact gaagagcacg tgctggtggt acgcctgctg
     1321 ctgaagcacc tgcatgcctt tgccaacagc ctgaagccag atcaggcttc gccatctgca
     1381 cactcccatg ccaccagtcc gctggaggaa ttcaaacggg ccgcagtgcc tcgctttgtc
     1441 cagcagaagc tgtacgtctt cctgcagcac tgttttggcc actggcctct ggatgcaacc
     1501 ttcagagctg tcttggagat gtggctgagc tacctgcagc catggaggta tgcccctgag
     1561 aaacaggctc agggcagcga tccccagcca cggtgtgtgt cagagaagtg ggcacccttc
     1621 atccaggaaa acctgctgat gtacaccaag ctgtttgtga gctttctgaa ccgtgcccta
     1681 cgcacagacc ttgtcagccc caagaatgca ctcatggtct tccgagtggc taaggtcttt
     1741 gcccagccca acctggctga gatgatccag aaaggtgagc agctgttcct ggagccggag
     1801 ctcatcatcc cccaccgcca acaccggctc ttcacagtca ccaccagctt cctgtcacca
     1861 tggccccctg ttgtgacaga tgcctccttc aaggtgaaga gccatgtcta tagcctagag
     1921 ggccaagact gcaaatatac cccaatgttt ggtcctgaaa tccgaaccct ggtcttgcgc
     1981 cttgctcagc tcatcacaca ggccaagcag actgccaagt ccatctctga tcagtatgtg
     2041 gaaagcccaa ctggccgctc cttcctgtca tggctgacct ttggcctcac agacacaaat
     2101 agctgctacc cagccaatga cctggatgaa ataggtcagg acagcatccg caagacagac
     2161 gagtacttag aaaaggccct ggagtacctg cgccagatat tccggctcag cgaagcccag
     2221 ctggcccagc tcacgcttgc cctggggagt gctcgggacg agaatgggaa gcagcagctc
     2281 ccagattgca ttgtggggga agaaggactc atccttacac ccttgggccg ctaccagatc
     2341 attaatggtc tgcgaaggtt cgagattgag taccagggag acttagagct gcagcccatc
     2401 cggagctacg aaatcaccag tctggtccgt gcactcttcc ggctgtcctc tgccatcaac
     2461 cgtagatttg caggccagat ggcagctctg tgctcccgga atgacttcct tggcagcttc
     2521 tgtcgctacc acctcactga gcctgccttg agcaacagac atctgctgag ccctgtaggg
     2581 cggaggcagg tcaccaatcc tgcacggggc cccaggctca gcctccgttt cctgggcagt
     2641 taccggacac tgctcctgct cctgatggcc ttctttgtgg cttctctgtt ctgcattggg
     2701 cccctgtcct gctccttgct cctggtccta ggatacgtcc tctatgccat agctatgaca
     2761 ctgctcactg aacgggggaa gctgcaccag ctctgagctg ctggccatcc tctcctgagc
     2821 agactgtggc aggttgctta gaagccagga atagaggggc aggtcatctt cagtgttctt
     2881 gggagtagtt tccctgcagt ggtggagtta ttcaaaagaa caaagagttg gaagggagag
     2941 tgatccaggc aggcctgaca cagaagggtc agtgtcagaa ggttcataag ccattgtgta
     3001 agacaatcag tgctggccat ggctcctcac cttcagtcca agggcacaca agcagctcaa
     3061 tatccactcc aggggagaag cagggttcta agagacagag cttggggttg gagcttggtc
     3121 tggccagcct ctgtggacac aaagcaaaaa agcattggtt ttgcctgtaa aactaaggaa
     3181 tttaagggag cgtcacattt gtaacaacac ctgtatgaaa aaaacacctt cacatcaaag
     3241 ctaagacacc aaagggctca agttcaccct gcaggtgaac accaccatct ccaaggtgtt
     3301 cttaaaccag cccttttgtt gtgggtgtgt agctgttttt aaagaaaaaa aaataccaac
     3361 ctgttttttt tcaaagttat cactgggctt tgtatttcga tgtaacttca gaatacatca
     3421 tgggacccat gaccaaaagt cagctcaaaa cataactgaa caaggatccg aataaaccat
     3481 tcttgcttcg gagattgtct gggctgaatc tttagcctgt ttacctgcca agggtccctg
     3541 ggcatttggg aactgtggag caagctcctg gacacggtac ctccttacct cgtgatggag
     3601 ttctttctga ctgaaagtcc cctttcatgc ctagggcatg ttggattcaa cttctgcaga
     3661 aacaagacaa ggcagactaa ccctgaggtg ggggcaggcc ctgtggtgcc ctgagaactg
     3721 atttccctgc ttaacacctc agaactggct gtcatccaga acaaatacca cattggcttc
     3781 cagaaacttc ctttttgtta aacagtgtca tttttatttt a
//
