LOCUS       NM_172396               2842 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 7 (Smim7), mRNA.
ACCESSION   NM_172396 XM_890881 XM_899268 XM_899281 XM_905229 XM_919226
            XM_919242
VERSION     NM_172396.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2842)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   2  (bases 1 to 2842)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK035786.1.
            
            On Apr 11, 2007 this sequence version replaced NM_172396.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK035786.1, SRR1660819.194999.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2842              AK035786.1         2-2843
FEATURES             Location/Qualifiers
     source          1..2842
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 35.08 cM"
     gene            1..2842
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="small integral membrane protein 7"
                     /db_xref="GeneID:66818"
                     /db_xref="MGI:MGI:1914068"
     exon            1..45
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..247
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="UPF0608 protein C19orf42 homolog"
                     /codon_start=1
                     /product="small integral membrane protein 7 precursor"
                     /protein_id="NP_765984.1"
                     /db_xref="CCDS:CCDS40390.1"
                     /db_xref="GeneID:66818"
                     /db_xref="MGI:MGI:1914068"
                     /translation="MIGDILLFGTLLMNAGAVLNFKLKKKDTQGFGEESKEPSTGDNI
                     REFLLSLRYFRIFIALWNVFMMLCMIVLFGS"
     exon            46..87
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            88..140
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            141..231
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            232..2842
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1075..1080
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1095
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="major polyA site"
     regulatory      2099..2104
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="hexamer: GATAAA"
     polyA_site      2118
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="major polyA site"
     polyA_site      2152
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
     regulatory      2821..2826
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2834
                     /gene="Smim7"
                     /gene_synonym="9130011J15Rik"
ORIGIN      
        1 ggacgccttg ggtgtaagga tgatcggaga catactgctg ttcgggacgc tactgatgaa
       61 cgccggggct gtgctcaact ttaaactgaa aaagaaggac acacaaggct ttggggaaga
      121 atcgaaggaa cccagcacag gagacaacat ccgagagttt ttactaagcc tgaggtattt
      181 ccggatcttc atcgcactgt ggaatgtgtt catgatgctc tgcatgatcg tactgttcgg
      241 ctcttgagtc ctgcgtggaa cccagagatc acctgctgga catcaaggct ctatttctgt
      301 ttctgatgac ttcaagaatc ttctcaatgg aaaaccaggg accttcccag aaggcccaag
      361 ctcatttggg tggagaatgt ccatttccca gctccctgac cctcgtcagc cacagtgaca
      421 aagtcagact ttattaggag aaagacctag gtctttacct tgtgctggca ttctatcttc
      481 tcctggccca gcttctccag aaacctgacc tgggctattt cttggttgaa ttgatggtga
      541 ttgttttggt ttgatttggg tgtctttgtc tgtttttttg tttttttgag acagggtttt
      601 tctggttagc cctggctatt ctggaactca cacaccagac gggcctcaaa ctcatagaga
      661 tccgcctgtc tctgcctctc aagtgctggg attaaaggtg tatgccacca ctcctggcct
      721 tgcacagatt gtccttaatt gatgtgactc aggcacctgc ttgccgggcc agctatgaca
      781 gtctagcagt ctcttttgca ctaccaggtc tatgctggtg gacccaacag tctggggcca
      841 gtgaggtctt acttccaaac gtttcctcct caccccataa ctgggtctac ctggggcagc
      901 caaagattgc tccaacattt ggaggagccg gtcctcctcc cttgggacac cagcctcttc
      961 tttagacact aagctgttag ccataacata ctcagcttct ccagaagagg cctgtggaag
     1021 aggtgctagt ggtgatgtta gcagacacct ctctgtgctt tcaagccact tgttaataaa
     1081 gtgactttgg ggccactcct ttattgttgc ttgtgatgtt ggcagcgtac tctgaaggtt
     1141 tgggtttctg ggtctctctt tgaaggaggg gagctcaagc ttgaggtgca tgaggttcag
     1201 aggcgactac gccatcagct ctgagatgcg ttccatctag agatggccat gccggcagtg
     1261 ctgagggact ttaatcagca tttgaaagct gtagcagctg gcttgctttg gggctctctt
     1321 tttggattgg tttctttctt ttctttttaa agattgttct gttttatatg tatggtattc
     1381 tgcctgcatg catgtctgca cacatgtgga tgcagggctt gcagaggcca gaagtcctct
     1441 aatctgcagc tagagttaca gccagttgtg aactgtcatg tgagtgctgg gtcttttgag
     1501 agtgacctgt gtcctgagcc cctcattttg gctttttttt aaagacagcc ccaaactgtg
     1561 gcagatgacc ttgaactcct tatcttttca gtagtgagac aagatcccaa ttgagtacta
     1621 ccataccagg tttttttatt ggctggttgg ttagtctttg agaccatctt gatggaatct
     1681 gtgctgattg agaactttcc attctcctgc ctcagcctct ttagtgctag aatcccaagt
     1741 gtgtactacc aaccctagtc ataatagcat tttaccccag gcttccccgg gaactatggg
     1801 gaaaactctg gtaatgtggg aactgggtca agtctaagtt caggctgcac agctgctgca
     1861 gacattgttg attgtgtcct tcacacccgc agcatgcctg agcctaccca cttgcctagc
     1921 attgtaacat gccactctgt tggctgatcc ccagccttgg atagttggga tggctttctg
     1981 cctttctcag cttaggactg tagtttcagg aaaaaaaggt tccattcatt ctgaagagga
     2041 attgtgctga aaaagaatgc tgtcataggg tttgcactta ttatctcatt tgagttctga
     2101 taaagtgttt ttggactact tactgtgtgt gtgaaaaatt gaaacccatg aatcttcttg
     2161 gtttttatta ttatttattt atttattttt ggttctgggc tagggccttt tgatgccact
     2221 gaaccatatc accagctcta tatgtgtgtc tgtttggaat gttgttcaga aacttctcgt
     2281 ggctggagat gtagttcatg tagagtgaca tagtataatt ttacaggaaa ggactgagag
     2341 tctggctcag gggtggagtt cctgcctaga atttcccagt gaggggctgg ggtgtgtggc
     2401 tcagggatgg ggtccctttc agaaccattt gagactctca agtcagatgt tctagaagct
     2461 gttaagcaat agctctttcc cttgctataa ccagatatat gtaacctgaa gtgacaaccc
     2521 actttgtgct cctgaaggtt aaacctgtta tcccaacgtt accactggga tatggagttt
     2581 cagttaaatt gtctctcacg cttaagagct acaagatatg aagtgctgtc ttctgcctcc
     2641 caccacccag cctgaacaaa taagccctct ttttatccct tctttacaac actgacaaac
     2701 acacaggtca agttgtccac aagtgatcat gctgggatgc tgcagagcgg aggactgtgt
     2761 tgtactgggt ctacctgatt atagtgtcgc acatacagcc acaagcatat gctgtgtgca
     2821 aataaaaaac aaaagagtta cc
//
