LOCUS       NM_183259                956 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 5 (Smim5), mRNA.
ACCESSION   NM_183259 NR_027814 XM_994133
VERSION     NM_183259.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL645647.8,
            AK004370.1 and AW124215.1.
            
            On or before Jul 2, 2009 this sequence version replaced
            NR_027814.1, NM_183259.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004370.1, AK020450.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AL645647.8         62300-62366
            68-933              AK004370.1         1-866
            934-956             AW124215.1         1-23                c
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.91 cM"
     gene            1..956
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /note="small integral membrane protein 5"
                     /db_xref="GeneID:66528"
                     /db_xref="MGI:MGI:1913778"
     exon            1..204
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            205..352
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             226..462
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /codon_start=1
                     /product="small integral membrane protein 5"
                     /protein_id="NP_899082.1"
                     /db_xref="CCDS:CCDS70347.1"
                     /db_xref="GeneID:66528"
                     /db_xref="MGI:MGI:1913778"
                     /translation="MAATDFVGEIRSVGERLLLKLQQLPQAEPVELVAFSIIVLFTAT
                     VLVLGLIACSCCCAHCCCSESRQRKIPVRPTKPR"
     exon            353..940
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      911..916
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      937
                     /gene="Smim5"
                     /gene_synonym="2210020M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaggcgctga agctggacag cagctggctg tcagcaaccg ggagctagca ccaggaggtg
       61 cccgagtgag aagcagccgc ctaggcagga aagtggcagc gctggtgaag aagtcaaagg
      121 tggtggccaa aggacttcca ggaggtacat agaggctctg tactgggaca cctcttcgag
      181 gctccccact atctgagctc ccagaccggc aggagcccta ccaccatggc agccacagac
      241 tttgtggggg agattcgctc tgtgggagag aggctgctgc tgaaactgca acaactcccc
      301 caggcggagc ccgtggagct cgtggctttc tccatcattg ttcttttcac agctactgtc
      361 ctggtgctgg ggctgatagc ctgcagctgc tgctgtgctc actgctgctg ctctgagagc
      421 agacagcgga agatcccggt gcggcccaca aaacccagat gagggacaac agcgagctgc
      481 ctggagagaa gctggacaag agccttccag gactgtaacc caggctatta ccatggccac
      541 tttactcttc tagacaaagg ttacctggcc ccagttgtgg catttcccag gtgacaggac
      601 agacatctgg agtcttatca aggaaacaag tgttgcccca tctgccgggg acacggggct
      661 ctgttggagc tgatggtttc acactcagac caccacctgg ggcatctgct aagctgaccc
      721 ttttaagggt cccgcacttc aatagggacc agctcatgct tgtcaggagc tggctcctga
      781 ggctctgctg acctatgcca aagagaagta agctagcgag ggactctgtg cactttatca
      841 gactccaggc ctcctgctga gggggaggaa catggcagca ttctggttaa aatttgtctg
      901 cttatttcca agtaaacact ttttggttat gtgtttatga aaaaaaaaaa aaaaaa
//
