LOCUS       NM_001369206            1368 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus small integral membrane protein 40 (Smim40),
            transcript variant 2, mRNA.
ACCESSION   NM_001369206
VERSION     NM_001369206.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1368)
  AUTHORS   Bergmann JH, Li J, Eckersley-Maslin MA, Rigo F, Freier SM and
            Spector DL.
  TITLE     Regulation of the ESC transcriptome by nuclear long noncoding RNAs
  JOURNAL   Genome Res 25 (9), 1336-1346 (2015)
   PUBMED   26048247
REFERENCE   2  (bases 1 to 1368)
  AUTHORS   Abe K, Yuzuriha M, Sugimoto M, Ko MS, Brathwaite M, Waeltz P and
            Nagaraja R.
  TITLE     Gene content of the 750-kb critical region for mouse embryonic
            ectoderm lethal tcl-w5
  JOURNAL   Mamm Genome 15 (4), 265-276 (2004)
   PUBMED   15112104
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT030732.13.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660811.289523.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-621               CT030732.13        214425-215045
            622-1011            CT030732.13        216863-217252
            1012-1368           CT030732.13        217654-218010
FEATURES             Location/Qualifiers
     source          1..1368
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 17.98 cM"
     gene            1..1368
                     /gene="Smim40"
                     /gene_synonym="Platr17"
                     /note="small integral membrane protein 40"
                     /db_xref="GeneID:474160"
                     /db_xref="MGI:MGI:3054967"
     exon            1..621
                     /gene="Smim40"
                     /gene_synonym="Platr17"
                     /inference="alignment:Splign:2.1.0"
     exon            622..1011
                     /gene="Smim40"
                     /gene_synonym="Platr17"
                     /inference="alignment:Splign:2.1.0"
     CDS             732..977
                     /gene="Smim40"
                     /gene_synonym="Platr17"
                     /note="pluripotency associated transcript 17"
                     /codon_start=1
                     /product="small integral membrane protein 40"
                     /protein_id="NP_001356135.1"
                     /db_xref="CCDS:CCDS89071.1"
                     /db_xref="GeneID:474160"
                     /db_xref="MGI:MGI:3054967"
                     /translation="MAEEEEGGVEEGDVFLAFAQGPIPPRGPVRRALDKIFLAFLVLF
                     LTLLMLEAAYKLLWPLPWAKFQDWLLRTPEEEAALEL"
     exon            1012..1368
                     /gene="Smim40"
                     /gene_synonym="Platr17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgacttc agggctggag tgaactgtga cccagcagtt aagagcactg gctgctcttc
       61 cagaggccct gggttctatt ctcagcaccc atatggcagc tcataacttc ctgtaactcc
      121 agttcctggg ggtctgatgg tctcacacaa catgtaggta aaacaccaat acacatcaaa
      181 taaaaataaa attacaaaaa gagaaaaggg aatgttttcc attttaaccc caggtgggga
      241 tagagggttg tttcagactg tccacagcag ctgactagga tttgccgcgg ctctagcaga
      301 ggcatggttg tgacagcagc tgatagtttc tgtatttgtg tggcatttgg aattctggag
      361 acttttcaga gggtgtatac atgctagagc ccatgagggt gtggtgggtt gttaggcttt
      421 tgtcattggg gaagttgttt tcagtttgtt agcaacaaaa ggaaagaagt gaggatttcc
      481 ctaattcctt ttcctcctct ctccttgttt ctcttatctc gggttagggg gtgacaccaa
      541 agtgtgggaa aaagaaccca caaagtagca aagaccaggt acacccttcc atggggagac
      601 accttgcttt cagtttaaca gggtcaaagc cagcagctgc gggatcgtca cacccttacc
      661 ctttaatccc agcgatgctg agccggcttc catcccctcg ctgagctagc cagctgtctg
      721 actgcttgaa aatggcggaa gaggaagagg gcggcgtgga ggagggggac gtgttcctag
      781 catttgccca gggtcccatt cctcctcggg ggcccgtgcg gcgggctttg gacaagatct
      841 tcctcgcctt cttggtcctc ttcctgactc tgctgatgct ggaggctgct tacaaactgc
      901 tgtggcccct gccatgggcc aagtttcagg actggctcct gaggacccct gaggaggagg
      961 cagctctgga actctgagcg tcttcataga ccacctgtcc ttgctactga gcccagctca
     1021 ctcaaagatt tattatatgt acgtacactg tcgctgtctt cagacacccc agaagagggc
     1081 atcagatctc attaaggatg gttgtgagcc accatgtggt tgctgggatt tgaactcagg
     1141 acctctggaa cagcagtcag tgctcttaac cgctgagcca tttctccaac ccttaagagt
     1201 gtattttatt tccttttgat ttcctgcaag tatcatggtt tcagttttct ttctggctgt
     1261 aagactccat tgtatgtccg aaccacattt tatctgtttt acgggccagt tggctgcttc
     1321 tgttcttttg cctattgcaa tcgctacagc aataaacatg gatgtgta
//
