LOCUS       NM_001395420            2679 bp    mRNA    linear   ROD 19-SEP-2023
DEFINITION  Mus musculus small integral membrane protein 39 (Smim39), mRNA.
ACCESSION   NM_001395420
VERSION     NM_001395420.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P,
            Eppig JJ, Solter D and Knowles BB.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CX239519.1, BU706793.1, DV653507.1, BM949486.1, BG695246.1,
            AA690818.1, BX515570.1 and BB077509.2.
            
            ##RefSeq-Attributes-START##
            bicistronic transcript :: inferred from conservation
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-455               CX239519.1         3-457
            456-643             BU706793.1         437-624
            644-1210            DV653507.1         143-709
            1211-1589           BM949486.1         267-645
            1590-1779           BG695246.1         496-685
            1780-1912           AA690818.1         149-281
            1913-2349           BX515570.1         74-510
            2350-2679           BB077509.2         342-671
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1"
     gene            1..2679
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /note="small integral membrane protein 39"
                     /db_xref="GeneID:121811709"
                     /db_xref="MGI:MGI:6848416"
     exon            1..261
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..224
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /codon_start=1
                     /product="small integral membrane protein 39"
                     /protein_id="NP_001382349.1"
                     /db_xref="GeneID:121811709"
                     /db_xref="MGI:MGI:6848416"
                     /translation="MARPPQPRRGPATPGGALRALLRCNLPPGAQRVVVSAVLALLVL
                     INAVLIFLLAFR"
     exon            262..441
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            442..621
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            622..801
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            802..1034
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1164
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            1165..1296
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1540
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1618
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..2679
                     /gene="Smim39"
                     /gene_synonym="Gm55978"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccttgagc tgggatctcc cggcgatagg agcccggagg ttggccgggc gtgatggcca
       61 ggcctccgca gccccggcgt ggccccgcaa cgcctggtgg tgccctgcgc gccctgctgc
      121 gctgcaactt gcccccgggc gcccagcgcg tggtggtctc cgctgtgctg gcgttgctgg
      181 tcctcatcaa cgccgtgctg atattcctac tggccttccg ctgagctgcg cgcgcccggc
      241 accgcggggg aaccgcgcag gctcatcagt gatggcagtg tggtgtgtgc tgaagccctg
      301 tgggaccatg tcaccatgga tgaccaggag ctgggcttca aagctgggga tgtcatcgaa
      361 gtgatggatg ccaccaacag ggaatggtgg tggggccgag tggcagatgg cgaggggtgg
      421 ttccctgcca gctttgtacg gctgcgcgtg aaccaggatg agcccgcgga tgactatgag
      481 gccccgcggg ccggggctag agaggccgat gacagcggtc cagaggctca gagctgcaag
      541 gaccagatgc gcacaaatgt catcaatgag atcctcagca ctgagcgaga ctacatcaag
      601 caccttcgcg acatctgcga gggctatgtc cgccagtgcc gcaaacggga ggatatgttc
      661 agtgaagagc agctgcgcac catctttggg aacatcgagg acatctaccg ctgccaaaag
      721 gcatttgtga aggctttgga gcagaagttc aacacggagc ggccacacct gagcgagttg
      781 ggggcctgct ttctggaaca ccaagcagac ttccagatct attctgagta ctgcaacaac
      841 caccccaatg cctgcgtgga gctctcccgg ctcacgaagc tcagcaagta cgtgtacttc
      901 ttcgaggcct gccggctgct gcaaaggatg attgacatct cgctggatgg ctttctgctg
      961 accccggtgc agaagatctg caagtatccc ctccagctgg cggagctgct caagtacaca
     1021 cacccccagc acagggactt taagaatgtt gaagctgcct tgcacgccat gaagaatgtg
     1081 gcccagctca tcaacgaacg gaaacgaaga cttgaaaaca tcgacaagat tgctcagtgg
     1141 cagagctcca tagaggactg ggagggggaa gaccttctgg tcaggagctc ggaactcatc
     1201 cactcggggg agctgacccg cgtgacacag cctcaagcca ggagtcagca gagaatgttt
     1261 tttctctttg accgccagct catctactgt aaaaaggatc tgcttcgccg ggacgtgctg
     1321 tactacaagg gccggctgga catggatgac ctggaggtgg tagatgtgga agatgggaag
     1381 gaccgagacc tccatgtgag tgtcaagaac gccttccgtc tgtactgtgg taccacgggg
     1441 gacagccacc tactgtgtgc caggaagcca gaacagaagc agcgctggct gaaggccttt
     1501 gccagagaga gggagcaggt gcggctggac caggagacag gcttctccat caccgagctg
     1561 cagaggaagc aggccatgct gaacgccagc aagcagcagg ccacggggaa gcctaaagct
     1621 gtgggaaggc caggatacct gacccgccac aagcatccat cattgcctgc cagccggccc
     1681 cagcagcaag tgttggtgct agcagagccc aggcggaagc catctaactt ctggcacagc
     1741 atcagcagac tggcgccttt ccgcaagtga gccagcatcc atcagacaac ctgacagcac
     1801 tttgtggacc catcctttcc tctctgaggc ctataccatc aggccctctg cctgttttac
     1861 aaactggaag tgaacaggca cagcgtcatg ctgtatgaag tctgggccct gcctctggcc
     1921 ccttccccat ggctagtgtg tgagtaccag cctctgacta tactctggac ctgcgcagag
     1981 cctccatcaa tggtaagcct gcacgccaca gctctaaacc tctggccagg ctgtgcacat
     2041 aggcgcatct gctctggaca ttctttggaa agctatcatc tccattctcc tgtttcctct
     2101 gggtaggaga ccaaaatctg tggccatgag ccacctgcca aagcaggtgt gtgcccctct
     2161 gctctttgtc tgttcaggcc cccagtgcac ttgtaacctg agaggtcagg aaccaggaat
     2221 tatgcactaa ctctacccat acatagctgt ccttatgcct cctggtccct gtagacactg
     2281 ctggctgcca gataccctct ttacttgtga catgtgtaac gagaaaacca tacagtcaac
     2341 tgtgtccctg gttccaggtt agtgacagtt ccctgtagct ggggtggctg cgcacacacc
     2401 cacccactca ctccctgttc actatgattt tggtcgtgtt gtttctctaa cactggagaa
     2461 ttgttaatga cacagaaaga ttgccttacc ctagttaagt gtgagaagcc ataaggactg
     2521 gactctggcc cctcatggcc ggcctcctcg tgaggcacat ggccgggcct gcacatggtg
     2581 cagagcctac aggactcaga agcatggagt cactcttgcg ctgcatcttc tctaatccaa
     2641 aagacacatt taatttcata aagaaacgaa tgaaaagtg
//
