LOCUS       NM_001395422            3013 bp    mRNA    linear   ROD 06-AUG-2024
DEFINITION  Mus musculus small integral membrane protein 36 (Smim36), mRNA.
ACCESSION   NM_001395422
VERSION     NM_001395422.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Church,D.M., Goodstadt,L., Hillier,L.W., Zody,M.C., Goldstein,S.,
            She,X., Bult,C.J., Agarwala,R., Cherry,J.L., DiCuccio,M.,
            Hlavina,W., Kapustin,Y., Meric,P., Maglott,D., Birtle,Z.,
            Marques,A.C., Graves,T., Zhou,S., Teague,B., Potamousis,K.,
            Churas,C., Place,M., Herschleb,J., Runnheim,R., Forrest,D.,
            Amos-Landgraf,J., Schwartz,D.C., Cheng,Z., Lindblad-Toh,K.,
            Eichler,E.E. and Ponting,C.P.
  CONSRTM   Mouse Genome Sequencing Consortium
  TITLE     Lineage-specific biology revealed by a finished genome assembly of
            the mouse
  JOURNAL   PLoS Biol 7 (5), e1000112 (2009)
   PUBMED   19468303
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC034117.1 and BC021914.1.
            
            ##RefSeq-Attributes-START##
            bicistronic transcript :: inferred from conservation
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2867              BC034117.1         1-2867
            2868-3013           BC021914.1         2516-2661
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11"
     gene            1..3013
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /note="small integral membrane protein 36"
                     /db_xref="GeneID:121811722"
                     /db_xref="MGI:MGI:5804831"
     exon            1..549
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..374
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /codon_start=1
                     /product="small integral membrane protein 36"
                     /protein_id="NP_001382351.1"
                     /db_xref="GeneID:121811722"
                     /db_xref="MGI:MGI:5804831"
                     /translation="MEFYLEIDPVTLNLIILVASYVILLLVFLVSCVLYDCRGKDPSK
                     EYAPESTLNAQPSIRVVVTQHSAHASHWARGPSLHLKDPAPLGKKSTVV"
     exon            550..612
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            613..694
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            695..855
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            856..930
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1032
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1102
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..3013
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2422..2427
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /note="hexamer: AATAAA"
     polyA_site      2447
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
     regulatory      2991..2996
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /note="hexamer: AATAAA"
     polyA_site      3013
                     /gene="Smim36"
                     /gene_synonym="Gm45716"
                     /note="major polyA site"
ORIGIN      
        1 agtcaatgta gcccttgtgt ttactccctg cgatgtccaa actgacccca aatgcctttc
       61 tctagacacg cttccccact gtgggagagg ggatggagtt ctacctggag atcgaccctg
      121 tcaccttgaa cctcatcatc ctggtcgcaa gctacgtcat cttgctcttg gtgttcctcg
      181 tctcctgtgt gctgtatgac tgccggggca aggatcccag taaggagtat gcgccggaga
      241 gcacactgaa tgcccagcct tccatccgag tggtggtaac tcagcacagt gctcatgcat
      301 cccactgggc aaggggaccc agccttcact tgaaggatcc tgctccgtta gggaagaaaa
      361 gcacggtggt gtgagactgg ggaacggaca ctgggtagag accaacaaat gcagcagaaa
      421 acaactgtcc ccactgtggc tcctgtgctc tccaaataca tggacatcct gattggctga
      481 ggaaacagag gctctgtctt actatctgcg ctctggtcac tctccttgtg aataaaacaa
      541 ctgtttaagg aatccctctt cggggacaca tccttgcctc agaatgtggg aggataccag
      601 agagaacact gttttcatga accatcgggc cccagctaat ggccgctaca aaccaacgtg
      661 ctacgaacat gctgccaatt gctacacaca cgcattcctc attgttccgg ccattgtggg
      721 cagtgccctc ctccatcggc tgtctgatga ctgctgggag aagataacag catggatcta
      781 cgggatgggc ctttgcgccc tcttcatagt ctccacagtg tttcacatag tatcatggaa
      841 gaagagccac ttgagaacag tggagcattg tttccacatg tgcgatcgga tggtcatcta
      901 cttcttcatt gctgcttcct acgccccatg gttaaatctc cgtgaacttg gacccctggc
      961 atctcatatg cgttggttta tctggctcat ggcagctgga ggaaccattt atgtatttct
     1021 ctaccatgaa aagtataaag tggttgaact tttcttctat ctcacgatgg gattttctcc
     1081 agccttggtg gtgacatcaa tgaataacac tgacggactt caggagctcg cctgtggggg
     1141 attgatttac tgcttgggag ttgtgttctt caagagcgat ggcatcattc cgttcgccca
     1201 tgccatctgg cacctgtttg tggccacggc agctgccgta cactactatg ccatttggaa
     1261 atacctgtac cgaagtccca cagactttat tcggcattta tgaccagtct gtgctaggtt
     1321 ttcaaatcag tattatcacg atggaggcac ttgggtgggg ggaggggcgg ggggagaact
     1381 gaatgtcgca cacagaagaa gagtgagcaa acttgcactg acttcgtttt aatttttttt
     1441 taatataatt actgtgaaag tataaaagct gtgtctcgga gttttcctct tcacaggcaa
     1501 cagatgaggt agtgaatcaa ttcttcattc cattccacta tcatgaagga ctcgggagag
     1561 acttggccaa ctgatgttta caaaccagaa atttttgtat ttttctttta cagattttaa
     1621 ctacgatgat ttttttctaa attaagtagg tcaggttgtc aaagtcagtg caatagtaat
     1681 acaacttcct ttttaagaaa acccaaagtt gtttctatca cgtttcccgt tcactgtgta
     1741 aaagaatcat ggaaactgaa cactactttt taccatgttt catcttgaca taacatggtt
     1801 attttttaaa aaggaggctt tagttctttt gtaaattttt aaagaaacga ttccattgac
     1861 gcacaccccc actggctcct catccatgcg aggtttttgc agcaaacggt caacattcca
     1921 cgaacaaaca ttatacctct tctggcagtt ttattaagtg tggagaactt gccaattttt
     1981 tagaaacact gcagtttttt ccaacctttt ctgccaatct ctaaccctga actcagtgct
     2041 gctttgggct gacatccatg actggtgtgg gccaccagga gtaagacagt agtgttttga
     2101 taccatccac tttttcagaa gacataactt cgctacatgc ctttgcccca gtttttctcc
     2161 agggtctctc tccacagtcg gggaggatcc tgtccggatt atgatagtat tattgggttg
     2221 cccatctgcc atgagctttc tgaatcatgg cgaattgtat ttgccacttt ggtgcccaac
     2281 ggttcaagtc attgtggtta agccacttaa ctttattgta tgagtttgat attcatttta
     2341 attgtgggac tagacacata aactcacatt tctgcctttt cctctgcatt tctcaatata
     2401 ttatgttttt ctcacgccat aaataaaaca ttgattggca ggttgaagct tgtgtcagtt
     2461 gttgatgggt tttatgctga ctctgtggag tgatatttat atattatttt tagtttcctc
     2521 tcaatgtctt atattaagat tgatgtatta gttgctttgt tggttaatct ttcttggtgt
     2581 ttaagagaaa tgaagtcacc ttgcctttag atcagatgct attataacct gtctgtctag
     2641 gaacaagctg tcagactaaa gatatggttt attcattgaa attctggaca gctgtacgtt
     2701 taaaagaaag tttattttgt atgtgtgtct aggctctgat ttttggtaaa ttgtaaagga
     2761 acaactgaag aactggttgc tggggatgtc ttcagtagtc aggagtaccc aaggataaca
     2821 ccagccacac cgctgtatat gcatgattct gaacagttag ccgcctgtta ttttactgtg
     2881 tatatttgac tttaaatata ttaacttttt gtggattcat ttaaagtctg ctcatatgca
     2941 gcactgtcaa aaccactaaa ctgtatttga gaacttgtgc tgtaggttag aataaagttg
     3001 ttacttgggt tga
//
