LOCUS       NM_001198971            1683 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus small integral membrane protein 35 (Smim35), mRNA.
ACCESSION   NM_001198971 XM_003084778 XR_108078
VERSION     NM_001198971.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1683)
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC166051.5.
            
            On or before Nov 18, 2010 this sequence version replaced
            XR_108078.1, XM_003084778.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049352.1, CB174122.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               AC166051.5         19185-19412
            229-345             AC166051.5         64812-64928
            346-379             AC166051.5         66386-66419
            380-508             AC166051.5         67578-67706
            509-1683            AC166051.5         72234-73408
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 24.84 cM"
     gene            1..1683
                     /gene="Smim35"
                     /note="small integral membrane protein 35"
                     /db_xref="GeneID:408059"
                     /db_xref="MGI:MGI:3040681"
     exon            1..228
                     /gene="Smim35"
                     /inference="alignment:Splign:2.1.0"
     CDS             222..479
                     /gene="Smim35"
                     /codon_start=1
                     /product="small integral membrane protein 35"
                     /protein_id="NP_001185900.1"
                     /db_xref="CCDS:CCDS52782.1"
                     /db_xref="GeneID:408059"
                     /db_xref="MGI:MGI:3040681"
                     /translation="MAGDDSISTLGMILGVGLSLLLVSILGYSLAKWYQRGYCWDGPN
                     FVFNLYQIRNLKDLEVGPPFTISGHMSSPDGGYMKFSNDRV"
     exon            229..345
                     /gene="Smim35"
                     /inference="alignment:Splign:2.1.0"
     exon            346..379
                     /gene="Smim35"
                     /inference="alignment:Splign:2.1.0"
     exon            380..508
                     /gene="Smim35"
                     /inference="alignment:Splign:2.1.0"
     exon            509..1683
                     /gene="Smim35"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      640
                     /gene="Smim35"
                     /note="major polyA site"
ORIGIN      
        1 ggggctactc acagttagtg ggaagagcta ggcttggcca cagctagctc tggtgttcag
       61 ggggttgctc taggtagcct taagccactc tgaccccctg aacctacacc taactatcag
      121 tcctaccacc gccggcaggc atctggccac ctgtggctat gcaggcagtt tgatgccttt
      181 atcaggctgg gaacaagacc ttgtctcttg gtgcctccac aatggcaggt gacgactcca
      241 tcagcacact gggcatgatc cttggagtgg gactgtcact gctgctcgtg tccatcctag
      301 gctacagttt ggccaagtgg taccagcgcg ggtactgctg ggatgggcct aactttgtct
      361 tcaacttata tcaaatccgg aacctgaagg acttggaggt tggcccaccc ttcaccatca
      421 gtggccacat gagcagcccg gatggtggct acatgaagtt ctccaatgac agagtctgat
      481 ggagcagtga ctagcttctg aaggtcaggt tcagagtgat gtctcccaag cacctggtct
      541 gctcagactt ctgtgaccat cataatcatc tcgatgcttc ttgaactgct ttcacctgca
      601 ttcaaatgct tctttgacat gaatggaaaa gttctaccca gtcatgcgtt catttattca
      661 ccatttatag ggtgctcatc accatgcact agcgttggct gggtgtagag ggcacagagg
      721 taaatcaaga ggtgtttctg ccatcaatga gctggaatga atgccaggta aagaaccttc
      781 aatgagacgt catagggaac tagtgaaaac agacaagttc caagactact ctctctctgt
      841 gacagatgag aagaccgagg tatagatcca tgtgcaaaga gctaatcata cctagcatct
      901 ggagaagcac tctttccatt ccctgaggct gcccttgagg tctctccagc ccaagagctt
      961 tgctatggta gtcagttagc ccgagtgaac agacatcaca tgcttgccct atctccacgc
     1021 cctccactcc atacaaggct ccacagcacc ggccctattc cctgtgctga ctctttgctg
     1081 gccttagatc ctgggatctc accttgtatt ggctgtcata gactccatgt ctgaggcttc
     1141 ccacatccac ctagcataat taatatacca cattctttac ctctttccag tgagtccagc
     1201 aggtgcgtac ccagcagcca caaggtattc cacaccgtgg cagctgcatg gggcaccaag
     1261 agtgacacat agtgacaggc cacatgttgg aagcacacac agggtctgag tggctcagag
     1321 gggctctcca gagggcactt tggcagcctt gaaacagcaa agtggatgaa gaacatatgg
     1381 ggacaaggaa ctggcatgca caaaggacca ggggcatgca cagcagtttg ttgggggaag
     1441 gcaggtgggt atgagggctt gtggggagag ggggtgagga tgttaaaggg aagagatgag
     1501 aaaggacagg aggtagcagg gagggcttga agaaccttct ggtttgagca gaacctttga
     1561 gtgctgtctt acaagctgtc cagtggaact cagacctcaa atttgcattt tcaactccaa
     1621 ctcctcagcc cagttaactg taaggaagat tatttagtgg tgagggatgc tggagacaaa
     1681 aaa
//
