LOCUS       NM_001352887            3177 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 30 (Smim30), mRNA.
ACCESSION   NM_001352887 NR_024619 XR_035242 XR_035283
VERSION     NM_001352887.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3177)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK152937.1 and AC113309.7.
            
            On Jun 23, 2017 this sequence version replaced NR_024619.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK152937.1, AK035027.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               AK152937.1         2-518
            518-3177            AC113309.7         116931-119590       c
FEATURES             Location/Qualifiers
     source          1..3177
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 5.8 cM"
     gene            1..3177
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="small integral membrane protein 30"
                     /db_xref="GeneID:66520"
                     /db_xref="MGI:MGI:1913770"
     exon            1..80
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            81..171
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            172..3177
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      766..771
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      786
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="major polyA site"
     regulatory      984..989
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: AATAAA"
     regulatory      995..1000
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: ACTAAA"
     polyA_site      1004
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="major polyA site"
     polyA_site      1017
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
     regulatory      1086..1091
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: AATACA"
     polyA_site      1113
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
     regulatory      1821..1826
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: TATAAA"
     polyA_site      1841
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
     regulatory      2444..2449
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2462
                     /gene="Smim30"
                     /gene_synonym="2610001J05Rik"
ORIGIN      
        1 gtaggcagca gggcttgtgg gaaatgtagt ctggcgacac cgccctgctc tccattcctg
       61 taatggctgc tttcggtccg gctgtgtcac gagtaacctc ttagcctcag catccggaag
      121 ttccaaagag aatatttcac gttgggtaga attacttata cccttgtttc ggcaagttca
      181 gccctccaga tcctagcatc atgaattcag tttcaacgca attgatctta gtcctcgctt
      241 cgctgctttt gatcctgcct gttgttgaag cagtggaagc tggagacgcg attgcactct
      301 tattaggtgt ggttctcagc attaccggca tctgtgcttg cttggggata tacgcaagaa
      361 agcgaaatgg acagatgtga ctctgaagga ctcttctgaa ttagactgca ccctgaccag
      421 tgtgctgaaa accattgttc tgttgaggcc gaccccaaga tttgatctct cccgttctca
      481 gcaagagggt tacagttagc tgagagttaa cactctcagt taagagatgc tttcacgttc
      541 atacttgttt cttctacaat gggggcagat gggagtggag ggcagatggg agtggagggc
      601 ggctcttaac aacaaagagt gcactaataa tgtggcccat aacttgtatt tgctgcttgg
      661 gaaggggcca aagtgagagg gcttaagttt gcaaaagtat tatttcatac tttcaagttg
      721 tcagagcaca tggaattgga agatggaagt atttgttcag aatctagtaa atctatattg
      781 ttataatcac tgcctcttgc attctgggga tctctctctc tcactctcac tctcactctc
      841 tcagagaacc ggttggggtg ggttttggat ttgttttatt gttgttactg gttttctttt
      901 tttttaatgc ttctgttttt atctcgcaag ttgatattgt acttagatct tagccaaaaa
      961 cttttatctc tgagaaaaag tttaataaaa atgtactaaa catatctaat actaaaatag
     1021 agaaaatatt tgttaaaaga taactttaca ttgagtatct tctccttgtg agatgtattg
     1081 tatcaaatac atagccatta tgccatcagt tcacctattg ttttggtctg cttgtatcta
     1141 tgagctaatt atttataatc tgagtgaaaa gggactggtt atgttacctt aaaggatcac
     1201 catgggcaag aaatgggcat ctttgagata gacgaggatt ctgatagaaa atccacaaat
     1261 aggaaaggaa gtgttttgat ttgtacacca gctaaaaagg tgtaccctct ttgccctagt
     1321 aattccaaga gtccccaaac caatagatta cagagatttt taattcacat ttttgggccc
     1381 aggacaaata ttctggctag aatttaaatt agaatgttat agtttcaaga aaaactactc
     1441 aaactgttag tacccaagag tcacttcagg tccttttgtt ccaaacagaa cttttaattc
     1501 tgtctgtatt gcatagaagt tgagaaagtg gaacctgaag acccaagctt ggcaaggatc
     1561 ttcaggcctt tgtttgattc tgaagaatga aatagtctca gtaagtcaaa gtagtctatg
     1621 ttctcaaagt agataatcca gctgttcccc aaaatgcctt gtccagtctc actctccaga
     1681 tgcccttaca ggccttggct tttgtcagga agcaggctgt ggccaataaa atttagtgtg
     1741 cagacccttt ccccactgaa ctgatgtggc atgcctgaga gttccagtta acagtaagaa
     1801 gtagtaagga atgcttacat tataaagaca tggaaaccaa atgggtttac tggttttttt
     1861 ttggaaggta ttttatcttt tcaccagaga aaaggctaac agtctttgtt tgggtaaatt
     1921 ggcatttaat aaaacgtgtt catgcatgct taggaaaaaa aagaacatgc aggtggcagg
     1981 acagctgtca tcttttgtcc accagctcat tggagcagat ttagaaagga agccttctct
     2041 tccttgccag tctcaacttc tctgggatgg ggaaaatcta acgtaaagcc cattataagc
     2101 cgaagtcatt taatcacctc ctgttttcct acaggaaaac agtctttact gacagtgtgt
     2161 ttccaaaact actccaaaga atgttttcaa caatggccat ttcttatttt atccttaaaa
     2221 gcagaggtag agggatatgc tttctaaaca ttttagcttc actgggccaa ggagatgact
     2281 cagtggataa aggcgaattc ctttactgat gacctacctg agctggatcc tcagcatcca
     2341 catcaaggaa gaaaagaacc aactcccaca gccgacaaca ccctgaccac catacgtgtt
     2401 cccaacatct cacatataca ctaaataatt agtgcttaat agaattaaaa gtgagaaggg
     2461 aggagcttca tttcttactt agacgataag attttgctta aacacaaaaa cctgggctgg
     2521 acagatggct ccattgataa caatgcttcc tgtacaagca tgaagatcta acacccctat
     2581 aaaacctggg cagcagcaca tgggttaaaa tctccacccc agggatagag acaggtgtgt
     2641 ccctgggcct tcctgcccag ccactagcca ctgcactgag tttcagattc atggagaagc
     2701 cctgctctca aaaataagcc tgagtgagga ataggttcgg tgctctgtcc ttcttatgtg
     2761 cacactcata ctgtgcgcac acacaaacac acacacacac aaagtcttag ggtggatctt
     2821 aaccaccagc tcctttgaga atctgataaa tacttttgat tattattttt ccctaactaa
     2881 atatccacac atgctcacat cttcagatta gttcacaaaa cttgcagagc taaaacccat
     2941 ctaggaatcg acagttaaga atctctggtt tgcttgttca tttgttcccc aagttcaaat
     3001 tctttccaat tgcacagttc attacattgc ttgcagagag aacagcggta ggattgacag
     3061 gtgtccctcg ggtgcctggc ccagagtctg atgtatgata aatggtctgc tagttagatg
     3121 ggctgagttt agttttgaaa gccagaaaca gtcaataaag aatttaaggt ctttgtc
//
