LOCUS       NM_001413715             924 bp    mRNA    linear   ROD 15-OCT-2024
DEFINITION  Mus musculus small integral membrane protein 29 (Smim29),
            transcript variant 3, mRNA.
ACCESSION   NM_001413715 XM_030249421
VERSION     NM_001413715.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC127341.3.
            
            On Nov 8, 2022 this sequence version replaced XM_030249421.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17253011.4733115.1,
                                           SRR17784651.89873.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                AC127341.3         185335-185407       c
            74-355              AC127341.3         184920-185201       c
            356-544             AC127341.3         184237-184425       c
            545-570             AC127341.3         184060-184085       c
            571-676             AC127341.3         183824-183929       c
            677-924             AC127341.3         183444-183691       c
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 14.53 cM"
     gene            1..924
                     /gene="Smim29"
                     /note="small integral membrane protein 29"
                     /db_xref="GeneID:106672"
                     /db_xref="MGI:MGI:2146839"
     exon            1..73
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     exon            74..355
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     exon            356..544
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     CDS             434..742
                     /gene="Smim29"
                     /note="isoform 1 is encoded by transcript variant 3;
                     uncharacterized protein C6orf1 homolog"
                     /codon_start=1
                     /product="small integral membrane protein 29 isoform 1"
                     /protein_id="NP_001400644.1"
                     /db_xref="GeneID:106672"
                     /db_xref="MGI:MGI:2146839"
                     /translation="MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKK
                     KRVDRLRHHLLPMYSYDPAEELQEAEQELLSDVGDPKVVHGWQSSYQHKRMPLLDIKT
                     "
     exon            545..570
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     exon            571..676
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     exon            677..924
                     /gene="Smim29"
                     /inference="alignment:Splign:2.1.0"
     regulatory      902..907
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim29"
                     /note="hexamer: AATAAA"
     polyA_site      924
                     /gene="Smim29"
                     /note="major polyA site"
ORIGIN      
        1 gatcacgcgc tggaggactc ttccggggcc ggggccaacc caaggtgttg ctgtcagggc
       61 tgcacggcgg gagctgggaa ccatctgccc acccaggcgg gccagcagca tcctaagagt
      121 ggcctcatac cttttcggtt ctggttcgcc cccctcggcc tgagacgggg agctcgcaac
      181 tgggaactgg caaaactgac ccatggacat gaggcagtca gccagtacct cttcctctct
      241 ctgagagtct gggacaggaa cttgagccat ctcagtgctg ccgcccgagg atgatcgcgt
      301 ttctgtcgat gggggcgacc ctctccacct ctgcctgtca gccctggccg agaggggagc
      361 ccagaggagg cgccctcccg aggccaccac tgcccatgca gtccatccat tcagccatct
      421 ggctactgat gtcatgagta acacgacagt gcccaatgcc ccccaggcca acagcgactc
      481 tatggtgggc tatgtgctgg ggcctttctt cctcatcacc ctggtcgggg tggtggtggc
      541 cgtggtaatg tatgtgcaga agaaaaagcg ggtggaccgg cttcgccatc atctgcttcc
      601 catgtatagc tatgaccctg cagaagaact ccaggaagct gagcaggagc tgctctctga
      661 tgtgggagac cccaaggtgg ttcatggctg gcagagcagc taccagcaca agcggatgcc
      721 cctgctggac atcaagacat gaccgtccac actccaccac tcacccagat aggtacagga
      781 gcatctgtct attctaacca cctacagctg gccccgagcc aagccttcca ggcagccgct
      841 cttccacact agcctattcc cacggtgaca ggtccagatg tataggtgta tatgttttgt
      901 aaataaaaac ttttgtggct tcaa
//
