LOCUS       NM_001349093             351 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 27 (Smim27), mRNA.
ACCESSION   NM_001349093
VERSION     NM_001349093.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL831793.4 and AA190030.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY716970.1, AA190030.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-18                AL831793.4         136439-136456
            19-351              AA190030.1         1-333
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 20.24 cM"
     gene            1..351
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /note="small integral membrane protein 27"
                     /db_xref="GeneID:100504309"
                     /db_xref="MGI:MGI:1913684"
     exon            1..141
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..246
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /note="Topors opposite strand transcript; topoisomerase I
                     binding, arginine/serine-rich, opposite strand; TOPORS
                     antisense RNA 1"
                     /codon_start=1
                     /product="small integral membrane protein 27"
                     /protein_id="NP_001336022.1"
                     /db_xref="CCDS:CCDS89727.1"
                     /db_xref="GeneID:100504309"
                     /db_xref="MGI:MGI:1913684"
                     /translation="MRPMSRRSLDWTYSLLLLAIVLLSWGFVIYASTVAARRQLQKEF
                     PDKFF"
     exon            142..332
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /inference="alignment:Splign:2.1.0"
     regulatory      309..314
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /note="hexamer: AGTAAA"
     polyA_site      328
                     /gene="Smim27"
                     /gene_synonym="2010003O02Rik; Toporsos"
                     /note="major polyA site"
ORIGIN      
        1 agagtcccgc tgaaaaatgg ctgctgcatc ggggtgcaat gcgcccgcga gcaggctgta
       61 gggcccttgc caccccgtcc ccgctgctcc cttaccatga ggccgatgag tcgccgaagc
      121 ctggactgga cttactccct gttgctcctt gcaatcgtct tgctctcttg gggattcgtc
      181 atctatgcat cgactgtagc tgcacgacga caactacaga aggagtttcc agacaagttc
      241 ttctgaacga acttttgtaa ttcttagcaa acacttcttt tcttcagatg gcacctatgt
      301 agactcaaag taaaattcac aatacaaatt tgaaaaaaaa aaaaaaaaaa a
//
