LOCUS       NM_001145433            1036 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Mus musculus small integral membrane protein 20 (Smim20), mRNA.
ACCESSION   NM_001145433 XM_913511 XM_983179
VERSION     NM_001145433.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   McIlwraith,E.K., Loganathan,N., Mak,K.W.Y., He,W. and Belsham,D.D.
  TITLE     Phoenixin knockout mice show no impairment in fertility or
            differences in metabolic response to a high-fat diet, but exhibit
            behavioral differences in an open field test
  JOURNAL   J Neuroendocrinol 36 (10), e13398 (2024)
   PUBMED   38733120
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY077818.1 and BC030079.1.
            
            On or before Feb 28, 2009 this sequence version replaced
            XM_913511.2, XM_983179.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC030079.1, DV070056.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                BY077818.1         2-65
            65-1036             BC030079.1         1-972
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 29.05 cM"
     gene            1..1036
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /note="small integral membrane protein 20"
                     /db_xref="GeneID:66278"
                     /db_xref="MGI:MGI:1913528"
     exon            1..253
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..348
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /note="mitochondrial translation regulation assembly
                     intermediate of cytochrome c oxidase protein of 7 kDa"
                     /codon_start=1
                     /product="small integral membrane protein 20"
                     /protein_id="NP_001138905.1"
                     /db_xref="CCDS:CCDS51502.1"
                     /db_xref="GeneID:66278"
                     /db_xref="MGI:MGI:1913528"
                     /translation="MAAARNLRTALIFGGFISMVGAAFYPIYFRPLMRLEEYQKEQAV
                     NRAGIVQEDVQPPGLKVWSDPFGRK"
     exon            254..310
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /inference="alignment:Splign:2.1.0"
     exon            311..954
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      936..941
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /note="hexamer: ATTAAA"
     polyA_site      954
                     /gene="Smim20"
                     /gene_synonym="1110067B18Rik; 1810013D10Rik; MITRAC7"
                     /note="major polyA site"
ORIGIN      
        1 agaggctcct ccctgcactc cgatcccgga agcgagctct gctccgcctc ttccgagctg
       61 ggtcgcgacc ttgaggccgg gaatcgagtt tccaaacgtg cgggggcctt cgccggctct
      121 gctgccccct ttctctccat ggcagcggcc cggaacctgc gcaccgcgct catattcgga
      181 ggcttcatct ccatggtcgg cgccgccttc tatcccatct acttccggcc ccttatgcgg
      241 ctggaggaat accagaagga gcaggctgta aatcgagctg gtattgtcca ggaagatgtg
      301 caaccgccag ggttgaaagt gtggtctgat ccatttggca ggaaatgagg ctgtcagcaa
      361 gtctgatgag gaaagtggac gtctttatcc tgtgcactcc gcagtgggga caatagatgc
      421 ctcactgtgg cagcatggca tggagaggga actctcatgc tgctagccag accccttgtg
      481 atagagactg tgtgcaaaga cagtgcttcc cttaactccc tggagaacct gaacagatgc
      541 caccattagg aagtgccttg cggctccatt gactttgcag gagcagagcc agcctgcaag
      601 gctgtttgtg gaagatctgc tgctcctgca gtctttatca cttccaagct gtgatgtgaa
      661 cacaagcaac ctgtgggctc aaggtccgtg gctgctctga caccttctga ataagcgatt
      721 tcagtgcaaa tggccttgcc aagctgcctc gcagggctct tggaggatgt ttcagttgat
      781 aaaactgttt gaagacagga tccttggcac tgtttaagaa tatacactgc tcagcttaac
      841 catctcattg aaagtcactg tgtgtggaag tgaataggga gcgagtcaca ctagactata
      901 ccacacacag tagactcctg cgtgaggctg caggtattaa aatggtttct cttaaaaaaa
      961 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1021 aaaaaaaaaa aaaaaa
//
