LOCUS       NM_001012667            1414 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 19 (Smim19),
            transcript variant 1, mRNA.
ACCESSION   NM_001012667
VERSION     NM_001012667.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Tanaka,K., Tamura,H., Tanaka,H., Katoh,M., Futamata,Y., Seki,N.,
            Nishimune,Y. and Hara,T.
  TITLE     Spermatogonia-dependent expression of testicular genes in mice
  JOURNAL   Dev Biol 246 (2), 466-479 (2002)
   PUBMED   12051830
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC140326.3.
            
            On Jan 6, 2022 this sequence version replaced NM_001012667.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC048089.1, BQ922100.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-329               AC140326.3         51675-52003
            330-388             AC140326.3         54035-54093
            389-527             AC140326.3         54929-55067
            528-652             AC140326.3         56936-57060
            653-1414            AC140326.3         65134-65895
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 11.42 cM"
     gene            1..1414
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /note="small integral membrane protein 19"
                     /db_xref="GeneID:102032"
                     /db_xref="MGI:MGI:2142501"
     exon            1..329
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /inference="alignment:Splign:2.1.0"
     exon            330..388
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /inference="alignment:Splign:2.1.0"
     CDS             379..717
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0697 protein C8orf40 homolog"
                     /codon_start=1
                     /product="small integral membrane protein 19 isoform 1"
                     /protein_id="NP_001012685.2"
                     /db_xref="CCDS:CCDS52521.1"
                     /db_xref="GeneID:102032"
                     /db_xref="MGI:MGI:2142501"
                     /translation="MLEVPMAGSYGVMADDGSIDYTVHEAWNEATNVYLIVILVSFGL
                     FMYAKRNKRKIMRIFSVPPTEGMLSEPSFYDTVSRIRLRQQVEAHPVSRKYEYQQPQS
                     QADSVQLSLE"
     exon            389..527
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /inference="alignment:Splign:2.1.0"
     exon            528..652
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /inference="alignment:Splign:2.1.0"
     exon            653..1414
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1008..1013
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /note="hexamer: ATTAAA"
     polyA_site      1026
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /note="major polyA site"
     polyA_site      1414
                     /gene="Smim19"
                     /gene_synonym="EST-c39"
                     /note="major polyA site"
ORIGIN      
        1 gcccgactcc cggaacagcc cgagcggagc ggagcggctc ggcgcggcgg cctccgcacc
       61 tcagcagccg ccgagcgccc gcccgcccgc tctcccgctc gctcgcccgc ccgcgcgcgg
      121 ctgcgtcacc gccccgcccc cgtcccggcc ccgccccgtc ccgtccagtc cgggcccagc
      181 cgcgggctgc gagctgctgc gggtcagatc ccgacctggg tgtctctgcg ggcggagtga
      241 gcggggcggc tgcagcgtgc ctagggtccc cggagcccgc agagacgccg gcgggagcgt
      301 gcggcgtccc gtcgcgggag gactgtcctc cagattcagt aaaccggcca agcttggtcc
      361 agctcccgat ggacaggcat gttggaagtt cccatggccg gaagttatgg tgtgatggct
      421 gatgacggtt ctattgatta cacagtccat gaagcctgga acgaagccac caatgtttac
      481 ttgatagtta tccttgttag ctttggtctc ttcatgtatg ccaagaggaa taaaaggaaa
      541 attatgagaa tatttagcgt gcctcccaca gaagggatgt tgtcagagcc aagcttttat
      601 gacacagtga gcagaattcg cttaagacaa caagtggagg cgcatcccgt ttcaagaaag
      661 tatgagtatc aacagccaca aagccaggcc gacagtgtgc agctctcatt ggaataaaac
      721 ttcagactga gcaacagaag tgaatgtgac gaagtacgag aaacacgttc ctcgcccctc
      781 tataagctca gcccagttgt gcccctcccc caagcctgct tgtgttgctt cttctgggac
      841 ttcctgcata agtgcaaaaa tgcttagaaa gaaaatgctt agtgactgga gatggggact
      901 tatccttttg aagatcaatg atgactccag gatacagtga aaaatacaag cacatctttg
      961 gaagcaagaa tcctagagtt aatgtctctt cagaatattt ctacagcatt aaaacatgat
     1021 atcctagctg ttggggtagt ttgctcttag gacgtggtct ataatgatat ttaacaattg
     1081 tagcagacta atttgtgttg cttccacgat tgttcctggc tctttgagtc aactttactt
     1141 caagacttgt atgacacaca aggaccttct aggctcttca gtgtcatgaa ggttatccca
     1201 tctgctgcct gtgggtactt tctgtatcgg gtttgtctcc ctttaattgc atccccaaaa
     1261 gttgttattt tgtttcggat cccacatttc ccttgcctcc atatggttcc tgggggccat
     1321 cctgttagac aaggagacat ctctgtcttg ctccctgttg ctgtggatgg ttacagcagt
     1381 gtcttctgct gcttaaagct ttgctgaaaa ccca
//
