LOCUS       NM_001134752            2171 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus small integral membrane protein 17 (Smim17), mRNA.
ACCESSION   NM_001134752 XM_001474771 XM_001474789 XM_001478530 XM_001478546
VERSION     NM_001134752.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   3  (bases 1 to 2171)
  AUTHORS   Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J,
            BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta
            A, Hansen G, Hu Y, Huang W, Jaing C, Key BW Jr, Kipp P, Kohlhauff
            B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick
            J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N,
            Zhu Q, Person C and Sands AT.
  TITLE     Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap
            screen to identify potential targets for therapeutic intervention
  JOURNAL   Proc Natl Acad Sci U S A 100 (24), 14109-14114 (2003)
   PUBMED   14610273
REFERENCE   4  (bases 1 to 2171)
  AUTHORS   Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido
            I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K,
            Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli
            R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A,
            Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V,
            Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF,
            Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik
            A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ,
            Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL,
            Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR,
            Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K,
            Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R,
            Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid
            J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou
            M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita
            M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C,
            Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z,
            Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N,
            Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K,
            Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A,
            Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A,
            Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M,
            Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   5  (bases 1 to 2171)
  AUTHORS   Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y,
            Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa
            K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T,
            Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K,
            Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W,
            Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo
            Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F,
            Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M,
            Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N,
            Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C,
            Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA,
            Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J,
            Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto
            N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF,
            Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L,
            Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and
            Hayashizaki Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   6  (bases 1 to 2171)
  AUTHORS   Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno
            H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii
            Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto
            H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and
            Togawa Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   7  (bases 1 to 2171)
  AUTHORS   Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M,
            Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   8  (bases 1 to 2171)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC188607.5.
            
            On Feb 9, 2019 this sequence version replaced NM_001134752.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK046418.1, SRR7345562.4372306.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                AC188607.5         157888-157938
            52-287              AC188607.5         167317-167552
            288-364             AC188607.5         169773-169849
            365-2171            AC188607.5         171974-173780
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 3.71 cM"
     gene            1..2171
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /note="small integral membrane protein 17"
                     /db_xref="GeneID:100042450"
                     /db_xref="MGI:MGI:4365374"
     exon            1..51
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /inference="alignment:Splign:2.1.0"
     exon            52..287
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..475
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /codon_start=1
                     /product="small integral membrane protein 17"
                     /protein_id="NP_001128224.1"
                     /db_xref="CCDS:CCDS51990.1"
                     /db_xref="GeneID:100042450"
                     /db_xref="MGI:MGI:4365374"
                     /translation="MQSLRTEQTQGLLPRDSRAWEKPCHSTFPKDWEAVEVGASSCDS
                     DEKDLSSQETGLSQEWSSVEEDDESEDSQGFVEWSKAPQQTTIVLVVCVLFLFLVLTG
                     MPMMLHI"
     exon            288..364
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /inference="alignment:Splign:2.1.0"
     exon            365..2171
                     /gene="Smim17"
                     /gene_synonym="Gm16532"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtccttgca gcttcagctc tgcagtgcct gcaagggtct gattggggag ggttttgaat
       61 cctgtacccg aggaaccctg caggacactg gaacaggaga agtaaaagaa agcctgcctt
      121 ggaagccacg cctcctcctg aggagatgca gagcctcagg actgagcaga cacagggact
      181 actgcctcgg gacagcaggg cctgggagaa gccatgccac tccaccttcc ccaaggactg
      241 ggaggctgtg gaggttgggg cctccagctg tgacagtgat gagaaagatc tgtcctccca
      301 agagactggg ctatctcagg aatggagctc agtagaagaa gatgacgagt cagaggactc
      361 ccagggcttt gtggagtggt ccaaggctcc acagcaaaca accatcgtgt tggtagtgtg
      421 tgtgctgttc ttattcttgg tattaactgg gatgcccatg atgcttcaca tttaactatc
      481 acaacagctg ctgtatggag acatgagccc tgtgtcacgt taaggaactg tcctggctag
      541 aaaccaggaa tggatactga gtattaagaa atgcttttca cacatccatt gaaagattta
      601 tttttaattc tgaatatgtg tgtgtatctt tgcgtgtgta tgtgctattg tgagtgcagt
      661 gcctgcggag gccagcagag ggagtttgag cccctgaagc taaagttgta ggcaattgtg
      721 agctgcctta atgggtgctg ggaacagagc tctggttctc tacaagagca gtaagtaccc
      781 ttaaatgctg agctgtgtct atagcttcat aagttttttt tcccataaaa ctttttatta
      841 agaggtttct gtacttctaa aatttattta aatgaatata taattgatta taaaaacatt
      901 attttgttta ctattgagaa gttttgtata ctgctgggca agaaaaaaaa cctgtgaatt
      961 aattggaaga cattctgaat tggaagacat ctcttcagag aagctgaaaa gtgtgcaact
     1021 taggatcaat gttgaaacac ctccctattt tttaaaatta tcattgtata atttaacatt
     1081 ttgcttgcct gtgttttttt gtaccatgtt tgcacctggt tcctgtggag gccagaagaa
     1141 ggtgttggat ctcttaaaat tggagttaca gatggctgtg agccactatg tgggtgctgg
     1201 gagctgaacc tggatctttt ggaagagcag ccagtactct taaatgtgga gccatcttcc
     1261 cagccccatt tttcataaca ccttcagtgt atacagtctt tccatataga cttccttttc
     1321 ttgctatttt atataaggac acttgcctct ctatcttgat gtgttaagtt ggtgctattt
     1381 ttgtgaagtt gtggtctcat ggcttaactt gacatctttg agagatctga gtaatttttt
     1441 ttttatgctt ttgaataatt tctgtagctt gagaagtatc aggtccttgg cagattaaaa
     1501 gagtttactg tggctggaga gatggcttca tggtttagag tgcatatcac ccttgcagtt
     1561 tgcttcctgg caaccgtatc aggcagctca caactccagc tccaggggct cagactcccc
     1621 ctgctggcct ccggggacat tgcatgcata tgtgcatacc cacccatagt cctccccccc
     1681 aacacacata taattaaaaa ataaatctta atttttttaa acaaaagaat tcaccagtaa
     1741 tcaattctga gatttgtgag agggaaatct cagaagatga gatgatgttt agaaagcagt
     1801 ttgaattatt atatgccatt actatgacaa ttctatcttg gtagcttagg aatacttttt
     1861 tacttcttgg attcattttg atgatttata ataatctttt atcctctaga gagttcttca
     1921 ttctgtaggt cttttgagac tataagctta attatgaaca ctatttttat aattaaacaa
     1981 aaaggttctc tgcatttttt cccatcactc ttttcctttg aactcgccgt tgtggcttcc
     2041 ttgttattta tttgctttta ccaaacactt atctggcgtt tgttactgtc tttccaaaga
     2101 tctagtgtct ggctttattt atatttattt ataatttata aaattataaa tatctgtatt
     2161 acttcttttg t
//
