LOCUS       NM_133697               4043 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 14 (Smim14),
            transcript variant 1, mRNA.
ACCESSION   NM_133697
VERSION     NM_133697.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4043)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4043)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4043)
  AUTHORS   Goncalves,L., Filipe,M., Marques,S., Salgueiro,A.M., Becker,J.D.
            and Belo,J.A.
  TITLE     Identification and functional analysis of novel genes expressed in
            the Anterior Visceral Endoderm
  JOURNAL   Int J Dev Biol 55 (3), 281-295 (2011)
   PUBMED   21553379
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ052807.1, AK164394.1 and AC136513.2.
            
            On Dec 5, 2019 this sequence version replaced NM_133697.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.1124425.1, AK044669.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                CJ052807.1         104-151
            49-2132             AK164394.1         2-2085
            2133-4043           AC136513.2         93268-95178
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 33.69 cM"
     gene            1..4043
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="small integral membrane protein 14"
                     /db_xref="GeneID:68552"
                     /db_xref="MGI:MGI:1915802"
     exon            1..148
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            149..257
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..482
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /codon_start=1
                     /product="small integral membrane protein 14"
                     /protein_id="NP_598458.1"
                     /db_xref="CCDS:CCDS19309.1"
                     /db_xref="GeneID:68552"
                     /db_xref="MGI:MGI:1915802"
                     /translation="MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLRELPG
                     PSSDSGISITVILMAWMVIAMLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD"
     exon            258..306
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            307..449
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            450..4043
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1061..1066
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="hexamer: AATAAA"
     polyA_site      1083
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="major polyA site"
     regulatory      4024..4029
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="hexamer: AATAGA"
     polyA_site      4043
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
ORIGIN      
        1 gcagatccgg gtctcgtggc taagagtgac gtggtctatc gaatccaaac agaggggagg
       61 aggccggcgg ccagcagcat cggcagcgac agcggcgtcc ggaacgctcc cggccgccac
      121 cctccccgcc cgccgctgtt ttgggcgggt ttaaatagtt gagtaaaatt acgctggtga
      181 ccatggctga aggaggattt gacccctgtg aatgtgtctg ctctcacgaa catgctatga
      241 ggaggctcat caatctgctc cggcagtccc agtcctactg caccgacaca gagtgccttc
      301 gggagttgcc aggaccctcc agtgacagtg gcatcagcat cactgtgatc ctgatggcct
      361 ggatggtgat cgccatgctc ctcttccttc tgaggcctcc taacctgaga ggctccagcc
      421 tccctggaaa gccctccagt cctcacagtg gacaggaccc gccagcccct cccgtggact
      481 aacgtcctgg tgtgggaagc agcaatggtt taacaccctg cacgaccgag cgactgaaga
      541 cgaccaggca ctaactgtct ccttttccat ctgcagtttg gatggtattg ttttcatgag
      601 cttctagaaa tttcacttgc caactgcctt ttgcttcctg agttgccacc gtccttattt
      661 acagtatccc tgagtaaatg attctattga aaagttgagg gctttgttgg ttggcctaag
      721 cttaaacatt ccactcgttc tccctgcaac cctgactaga acgtctgtgg tggtttctgg
      781 cccagctgaa ggaaaattga gatttctgca tttaagtatt ttaagtgggt tttgatagat
      841 tttaattctt tccataaggt atttatttgg ggttgtctgg tgtgagtgac agagccacac
      901 tgtagttact ttactggccc ttttctgtag tccttgggac agtgagcatt ttcctcacaa
      961 cctccagctg gctttatggc tagaatacgg aaagcgaact ggttgtttac tgattttttt
     1021 ttaattccca ttaaaatttt ctgatgttaa gaatacttta aataaacatg attgattaat
     1081 atagtggttg gtttagaatc catttcgtgt cattgaaagc cactgtatgc tagccttcct
     1141 cgcctcacga tatttgttct tcaagttgag tgcctcttca gcaagcttct cttccagtct
     1201 aacccttccc tgttaaaatc gcctgtgtgt ggggctggca ttttaacacc cgtgacttaa
     1261 attcatacct tttttttttt aattaaaaaa aatgaatctt ttgttgcctt ctgacttatg
     1321 aggagaagag cctttaatct gaggtcttgg tttcttccaa gggaaaggag gagaatgaca
     1381 aacgagaata tttttgtcac ctctcagctc agttctgttt agcagtagga tgcagatgca
     1441 ttggagttgg aaggagcgtt ggtaactgag attttgaaat gtgtttaacc agtcagaagt
     1501 tcaaaagcag tgaatacaga ctgcatcaaa caggcctggg cggcctggac gcctggactc
     1561 tctcctccta ggaatcactg caggggattt gtccggacca gaacatattt tgttatcaag
     1621 gtaaaggctg atcccttctt gggcagtcta ggctgtcact gtacagagct gagagactat
     1681 ttgtgtgagc taaatgaact tctaccatac tgcaccacga cctgccctgt gacccaattg
     1741 ggtaacctgc cctttctccc aagcagtggt tatcaaggtc tggctgtaag cattgttaag
     1801 ggcatctctt tgtcccgtat ggtaatcctg gctacttgtg ctcttcctgg ttcccttggc
     1861 tttgtactca acatttaaac aataatataa ccacctctta gctacttgtg tttctaagga
     1921 gtgacttaac caggtaagtt aaattctgaa caaattaaca acacacggta caggattcct
     1981 cttttgctgt ggccacccag aagtcttacc cgcttagtag cctgtagcca gtttaacaca
     2041 aaaagccaga tatggtagca gtctcaagac cagacgaggc tacatagtga atttcaggtc
     2101 aggtttggcg aggcatggga agactttgtc tcacaaagga aaaaaaatgg ggtgagggac
     2161 ttaacctgag caaaactgga atggcctcga gtggatctaa agctgtagtg tttcttctcc
     2221 tgccctcagc ctttgaaggc tgcacatatg tcccaacagt gctttctaac ctgctgatgg
     2281 cctcacacag tctgcctcac aaatagctga gacttcacct tggattaaaa taaaaatggc
     2341 gaagggtaga aagaaggctt ggcagttacg agcactggct gctcttccag aggacccagg
     2401 ctcatttccc agccaccaca cggcagctca cagctgtctg taactccagg gtatccaaca
     2461 ccctcacaga ggcatacacg caggcaaaag accaatgagc ataaaagaag agtaaatcaa
     2521 ttatttttta atggagacaa tgtggataca gaacatctag tattagagac ctggaaaagt
     2581 atatttttat tctgggtatt catttctacc acgtgcactt acgtctaaat atcatagttt
     2641 ttccctatgt aaccccccta ttacgttagt aactcagcac cctttttttt taacctgata
     2701 aagattttac tttctgacat agaaatggct tagttatgtg ttcatcagaa gtacatatga
     2761 gcacagttgt acagaaggtt ccatcaagac ttgtgtgtgt gtgtgtttga gacagggttt
     2821 ctctgcctag ctctggcctc aagcccagag atccacctgc ttttgcctcc ctggctgaga
     2881 ttaaagccat gtgccaccac cacctggcct gacccaggcg tttcagtgct tggtaacagt
     2941 tggatttctt tgagaagtac ttggccttgg gtttttacct ttagtctttg ctatttttgt
     3001 tttctttggt aattttttct atattcctaa ggtgataata tcttgcataa aatattatta
     3061 ctaacccaat taataatttg ctattctctt ccttaagtgt ctacatgtgg ccctttaagc
     3121 tagcatattt gttcaccatt atttggcttg caaacattca cttgctctgt agctagaatt
     3181 ctcgtaaact aaaaagagaa agcttacagt cttgacgtta ggccgtccac gccaccaaga
     3241 gcagtcactt gagagcttct tcatactgtt tcatacaaaa tctagtagtt ttgcttttct
     3301 gttttccaca ttgggagtat ttatagcaaa agattttatc atgtacctaa acactatccc
     3361 atgcctaaga actcatgttc taacaatgta caggggttct ccagagtcgc cactgagtac
     3421 tctatgagac aatgtgcagg gttctccaga gtcgccactg agtactctat gagacaatgt
     3481 gcagggttct ccagagtcgc cactgagtac tctatgagac aatgtgcagg gttctccaga
     3541 gtcgccactg agtactctat gagtactggg aattgtccca tgcttccact tagcgtttgt
     3601 gatactgttt atggaattac taatatctta gacttctaaa ggacttgtgg aagtctgtca
     3661 ttctaaatga cagtttgtct tcagtgattt tttttttact gcagtttgat cagctcactt
     3721 taaaacacaa aacagcaact tgaagatgga aaatacaaat ggtttaaatt ttgttgttgc
     3781 catagaaaat agggacagtc ttagatttct cagtgaagca ccctgtgtat cattacatgt
     3841 ccagtgatta ttttgttaaa ggcaaagggg tcatgtgatg tactaaatgt aatttgctgt
     3901 ttctcaatgt ttaaatcatg ccaaacaaat cagcccgtgc catctagcct gtggtgttaa
     3961 tcttctactg aggacttggg ttggggttaa gggcttgtac tatgcacttt ttattaatga
     4021 ataaatagaa aatgttagta aca
//
