LOCUS       NM_001376975            4097 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 14 (Smim14),
            transcript variant 6, mRNA.
ACCESSION   NM_001376975 XM_006504083
VERSION     NM_001376975.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4097)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4097)
  AUTHORS   Cui,W., Dai,X., Marcho,C., Han,Z., Zhang,K., Tremblay,K.D. and
            Mager,J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4097)
  AUTHORS   Goncalves,L., Filipe,M., Marques,S., Salgueiro,A.M., Becker,J.D.
            and Belo,J.A.
  TITLE     Identification and functional analysis of novel genes expressed in
            the Anterior Visceral Endoderm
  JOURNAL   Int J Dev Biol 55 (3), 281-295 (2011)
   PUBMED   21553379
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC136513.2.
            
            On Dec 5, 2019 this sequence version replaced XM_006504083.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1210499.1,
                                           SRR7652917.510335.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               AC136513.2         49139-49286
            149-202             AC136513.2         64643-64696
            203-311             AC136513.2         73521-73629
            312-360             AC136513.2         81450-81498
            361-503             AC136513.2         88694-88836
            504-4097            AC136513.2         91585-95178
FEATURES             Location/Qualifiers
     source          1..4097
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 33.69 cM"
     gene            1..4097
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="small integral membrane protein 14"
                     /db_xref="GeneID:68552"
                     /db_xref="MGI:MGI:1915802"
     exon            1..148
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            149..202
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            203..311
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..536
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /codon_start=1
                     /product="small integral membrane protein 14"
                     /protein_id="NP_001363904.1"
                     /db_xref="GeneID:68552"
                     /db_xref="MGI:MGI:1915802"
                     /translation="MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLRELPG
                     PSSDSGISITVILMAWMVIAMLLFLLRPPNLRGSSLPGKPSSPHSGQDPPAPPVD"
     exon            312..360
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            361..503
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     exon            504..4097
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1115..1120
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="hexamer: AATAAA"
     polyA_site      1137
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="major polyA site"
     regulatory      4078..4083
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
                     /note="hexamer: AATAGA"
     polyA_site      4097
                     /gene="Smim14"
                     /gene_synonym="1110003E01Rik; 1700127H04Rik;
                     5430439C17Rik; MAd4"
ORIGIN      
        1 gcagatccgg gtctcgtggc taagagtgac gtggtctatc gaatccaaac agaggggagg
       61 aggccggcgg ccagcagcat cggcagcgac agcggcgtcc ggaacgctcc cggccgccac
      121 cctccccgcc cgccgctgtt ttgggcggct acatgtacat ctgtgaagat gtcagaagtc
      181 caggaactgg agttacagat gggtttaaat agttgagtaa aattacgctg gtgaccatgg
      241 ctgaaggagg atttgacccc tgtgaatgtg tctgctctca cgaacatgct atgaggaggc
      301 tcatcaatct gctccggcag tcccagtcct actgcaccga cacagagtgc cttcgggagt
      361 tgccaggacc ctccagtgac agtggcatca gcatcactgt gatcctgatg gcctggatgg
      421 tgatcgccat gctcctcttc cttctgaggc ctcctaacct gagaggctcc agcctccctg
      481 gaaagccctc cagtcctcac agtggacagg acccgccagc ccctcccgtg gactaacgtc
      541 ctggtgtggg aagcagcaat ggtttaacac cctgcacgac cgagcgactg aagacgacca
      601 ggcactaact gtctcctttt ccatctgcag tttggatggt attgttttca tgagcttcta
      661 gaaatttcac ttgccaactg ccttttgctt cctgagttgc caccgtcctt atttacagta
      721 tccctgagta aatgattcta ttgaaaagtt gagggctttg ttggttggcc taagcttaaa
      781 cattccactc gttctccctg caaccctgac tagaacgtct gtggtggttt ctggcccagc
      841 tgaaggaaaa ttgagatttc tgcatttaag tattttaagt gggttttgat agattttaat
      901 tctttccata aggtatttat ttggggttgt ctggtgtgag tgacagagcc acactgtagt
      961 tactttactg gcccttttct gtagtccttg ggacagtgag cattttcctc acaacctcca
     1021 gctggcttta tggctagaat acggaaagcg aactggttgt ttactgattt ttttttaatt
     1081 cccattaaaa ttttctgatg ttaagaatac tttaaataaa catgattgat taatatagtg
     1141 gttggtttag aatccatttc gtgtcattga aagccactgt atgctagcct tcctcgcctc
     1201 acgatatttg ttcttcaagt tgagtgcctc ttcagcaagc ttctcttcca gtctaaccct
     1261 tccctgttaa aatcgcctgt gtgtggggct ggcattttaa cacccgtgac ttaaattcat
     1321 accttttttt ttttaattaa aaaaaatgaa tcttttgttg ccttctgact tatgaggaga
     1381 agagccttta atctgaggtc ttggtttctt ccaagggaaa ggaggagaat gacaaacgag
     1441 aatatttttg tcacctctca gctcagttct gtttagcagt aggatgcaga tgcattggag
     1501 ttggaaggag cgttggtaac tgagattttg aaatgtgttt aaccagtcag aagttcaaaa
     1561 gcagtgaata cagactgcat caaacaggcc tgggcggcct ggacgcctgg actctctcct
     1621 cctaggaatc actgcagggg atttgtccgg accagaacat attttgttat caaggtaaag
     1681 gctgatccct tcttgggcag tctaggctgt cactgtacag agctgagaga ctatttgtgt
     1741 gagctaaatg aacttctacc atactgcacc acgacctgcc ctgtgaccca attgggtaac
     1801 ctgccctttc tcccaagcag tggttatcaa ggtctggctg taagcattgt taagggcatc
     1861 tctttgtccc gtatggtaat cctggctact tgtgctcttc ctggttccct tggctttgta
     1921 ctcaacattt aaacaataat ataaccacct cttagctact tgtgtttcta aggagtgact
     1981 taaccaggta agttaaattc tgaacaaatt aacaacacac ggtacaggat tcctcttttg
     2041 ctgtggccac ccagaagtct tacccgctta gtagcctgta gccagtttaa cacaaaaagc
     2101 cagatatggt agcagtctca agaccagacg aggctacata gtgaatttca ggtcaggttt
     2161 ggcgaggcat gggaagactt tgtctcacaa aggaaaaaaa atggggtgag ggacttaacc
     2221 tgagcaaaac tggaatggcc tcgagtggat ctaaagctgt agtgtttctt ctcctgccct
     2281 cagcctttga aggctgcaca tatgtcccaa cagtgctttc taacctgctg atggcctcac
     2341 acagtctgcc tcacaaatag ctgagacttc accttggatt aaaataaaaa tggcgaaggg
     2401 tagaaagaag gcttggcagt tacgagcact ggctgctctt ccagaggacc caggctcatt
     2461 tcccagccac cacacggcag ctcacagctg tctgtaactc cagggtatcc aacaccctca
     2521 cagaggcata cacgcaggca aaagaccaat gagcataaaa gaagagtaaa tcaattattt
     2581 tttaatggag acaatgtgga tacagaacat ctagtattag agacctggaa aagtatattt
     2641 ttattctggg tattcatttc taccacgtgc acttacgtct aaatatcata gtttttccct
     2701 atgtaacccc cctattacgt tagtaactca gcaccctttt tttttaacct gataaagatt
     2761 ttactttctg acatagaaat ggcttagtta tgtgttcatc agaagtacat atgagcacag
     2821 ttgtacagaa ggttccatca agacttgtgt gtgtgtgtgt ttgagacagg gtttctctgc
     2881 ctagctctgg cctcaagccc agagatccac ctgcttttgc ctccctggct gagattaaag
     2941 ccatgtgcca ccaccacctg gcctgaccca ggcgtttcag tgcttggtaa cagttggatt
     3001 tctttgagaa gtacttggcc ttgggttttt acctttagtc tttgctattt ttgttttctt
     3061 tggtaatttt ttctatattc ctaaggtgat aatatcttgc ataaaatatt attactaacc
     3121 caattaataa tttgctattc tcttccttaa gtgtctacat gtggcccttt aagctagcat
     3181 atttgttcac cattatttgg cttgcaaaca ttcacttgct ctgtagctag aattctcgta
     3241 aactaaaaag agaaagctta cagtcttgac gttaggccgt ccacgccacc aagagcagtc
     3301 acttgagagc ttcttcatac tgtttcatac aaaatctagt agttttgctt ttctgttttc
     3361 cacattggga gtatttatag caaaagattt tatcatgtac ctaaacacta tcccatgcct
     3421 aagaactcat gttctaacaa tgtacagggg ttctccagag tcgccactga gtactctatg
     3481 agacaatgtg cagggttctc cagagtcgcc actgagtact ctatgagaca atgtgcaggg
     3541 ttctccagag tcgccactga gtactctatg agacaatgtg cagggttctc cagagtcgcc
     3601 actgagtact ctatgagtac tgggaattgt cccatgcttc cacttagcgt ttgtgatact
     3661 gtttatggaa ttactaatat cttagacttc taaaggactt gtggaagtct gtcattctaa
     3721 atgacagttt gtcttcagtg attttttttt tactgcagtt tgatcagctc actttaaaac
     3781 acaaaacagc aacttgaaga tggaaaatac aaatggttta aattttgttg ttgccataga
     3841 aaatagggac agtcttagat ttctcagtga agcaccctgt gtatcattac atgtccagtg
     3901 attattttgt taaaggcaaa ggggtcatgt gatgtactaa atgtaatttg ctgtttctca
     3961 atgtttaaat catgccaaac aaatcagccc gtgccatcta gcctgtggtg ttaatcttct
     4021 actgaggact tgggttgggg ttaagggctt gtactatgca ctttttatta atgaataaat
     4081 agaaaatgtt agtaaca
//
