LOCUS       NM_001135577            4499 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus small integral membrane protein 13 (Smim13), mRNA.
ACCESSION   NM_001135577 XM_001472442 XM_001473940
VERSION     NM_001135577.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4499)
  AUTHORS   Corbo,J.C. and Cepko,C.L.
  TITLE     A hybrid photoreceptor expressing both rod and cone genes in a
            mouse model of enhanced S-cone syndrome
  JOURNAL   PLoS Genet 1 (2), e11 (2005)
   PUBMED   16110338
  REMARK    Erratum:[PLoS Genet. 2008 Jan;4(1):e18]
REFERENCE   2  (bases 1 to 4499)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK781484.1, BC066054.1, BC094222.1 and BE949208.1.
            
            On Nov 22, 2008 this sequence version replaced NM_001135577.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK781484.1, BC066054.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                CK781484.1         1-16
            17-953              BC066054.1         1-937
            954-996             BC094222.1         938-980
            997-4480            BC066054.1         980-4463
            4481-4499           BE949208.1         1-19                c
FEATURES             Location/Qualifiers
     source          1..4499
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 20.41 cM"
     gene            1..4499
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="small integral membrane protein 13"
                     /db_xref="GeneID:108934"
                     /db_xref="MGI:MGI:2652854"
     exon            1..471
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             396..662
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="UPF0766 protein C6orf228 homolog"
                     /codon_start=1
                     /product="small integral membrane protein 13"
                     /protein_id="NP_001129049.1"
                     /db_xref="CCDS:CCDS49246.1"
                     /db_xref="GeneID:108934"
                     /db_xref="MGI:MGI:2652854"
                     /translation="MWHNVGLTLLVFVATLLIVLLLMVCGWYFVWHLFLSKFKFLREL
                     VGDTGSQEGDNEQPSGSETEEDPSASPQKIRSARQRRPPVDAGH"
     exon            472..4483
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      822..827
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      843
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="major polyA site"
     regulatory      4460..4465
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="hexamer: AATAAA"
     regulatory      4464..4469
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
                     /note="hexamer: AATGAA"
     polyA_site      4471
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
     polyA_site      4477
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
     polyA_site      4483
                     /gene="Smim13"
                     /gene_synonym="2900036K02Rik"
ORIGIN      
        1 ggggagtggt tgacatctgg cgtctccgag ggaggagggg gacctcgagt gagctgcagc
       61 cagggcctgg cgttcgccgc gccacctcca gatcactctt tccccgcctc gacgtccgcc
      121 atggcagcgc gtccgtccgt cgccggcctc tccgctcgcc gtggctccgg ctccccggag
      181 cgatgaggag gcggtagtgg cgtcccaagg cccgctccac cagcgactcg gtcgccccgg
      241 ccgggggcag gtctgagggc cggtcccgtc gcggcccgcc cccgcaccgc caagttccgc
      301 cccctggggg cgctgccctc gggcacccgc ggtccatgcc gccccgccgc tctgccgccc
      361 gccgctgagc ccgcgcccac cccccagctc tcaaaatgtg gcacaacgtg gggctgaccc
      421 tgctggtgtt cgtggccacg ctgctgatcg tcctgttgct gatggtgtgc ggttggtatt
      481 ttgtatggca tctattttta tctaaattca agtttcttcg ggagcttgtg ggagacacag
      541 gatcccagga aggagataat gagcagcctt cagggtctga aacagaagaa gacccttcgg
      601 cttcaccaca gaagatcaga tctgctcgcc agagaaggcc acctgttgac gccggccact
      661 gagcagacaa agcagtgtct tagagtgtgg gccaaggcag tcacgagcct ctgtccttag
      721 tggcgaccta gctttgaaag ttactaagtg accgaggaac atttgcaatt ggatttatat
      781 ccagttttaa aaaaaaaaga tttacacgta agccatatag aaataaaggg aatttaaacc
      841 aaatggggcc attgcagatt tcatcttgga tattttgctt cactaggtct ctttaacaca
      901 ctcactcgct ggctcctgga ctcatccttt ctttctttct tttttttttt ttttaatttc
      961 actggtataa atctgtaaac attttaggct tgaaaaaaca tgttattagt cattaaaatg
     1021 tacccttttc ttgacatttt gcctcgtcag aaattgggaa gtatctcatt gctgtcagcc
     1081 aggtaatagt cttgtcatta tcctaactca tgcatatatg acttcacagc ttgttacagt
     1141 gtcattacct cagctgatgt gtatattgtt ggtatcaaat atttcaggtt taattggcat
     1201 tttaaaaacg tttttaaaaa gacagcgcta tgactcagca ttgaaatgaa aggttattgt
     1261 atgtgtcgaa aaccatggaa acaacattgg aacatgtttg atattagtga tgccaacatt
     1321 tgtggctgga gaaatgatca caagtctata ttttcatgca aagaaacagc aaaatgcttt
     1381 acaggactta agaaaggaag agacccacaa gttgacgaag ccatgctata ttttgtcaat
     1441 gagacacttg caaagcaatt gccattcttc acgccaagtg atggcagtca aaggcaggag
     1501 aaattgccaa aatcctcaga attgatctga caaaattcaa agcagagaga ggctcctatg
     1561 accgcatcac agagtgaact gccattaaga catccaaggt tttatccaaa gctgtttgct
     1621 ggtattagac agaaggcagt gtcgagcagc ccttctggaa atgttgcatg gccagtgctc
     1681 tagacgtggg tgggaaggta cagattccta ccgctaatct gagaagtgat gtggaggggg
     1741 ggactgaggt tacagttaga gcttaaccag tttatttcac acatttgtta cagaggcaca
     1801 agatttacgt gatagaaata ctttagaaca tggaataaat gcaaaataaa acatgtttct
     1861 gtgataccag gcacatgcca tagcttaatg ggcgatgctt tcttcgtaga cacacatggt
     1921 gcatcctaat agatggttat ttagattaag taaaagtgat aatatgtaaa tttacttttc
     1981 aagatagcag ttatttattg gagaatttaa gtataaatct tacagtgtta acagttattt
     2041 tttatgaaat acttttaggt taaacctatt ggggaaaagt tttagcgttg tagttaggaa
     2101 tctaagagct gtcttctcct ttatggagaa tgttatcagt ccctccttta tatgaggact
     2161 tatgttctgg gcttctgttg tggagaaagt acttcacgaa cagcaattca tcgacaagac
     2221 ctcaagagta ctagggcttg agaaagtact ggttgaaaat acctgcttgg ctgtgtaaaa
     2281 tgcctcttgc caggagtcca tgtttgttct acccgaactt tggactgtta actagagaag
     2341 tgatagactg atgaaccttc tagtgttgtc tgctccatac gggaaatgag cttcaaggcc
     2401 aagctccttc ctcatccttg ttctttacag ccctgtttaa cctcagttgt tacctcatcc
     2461 ttcgctctgg cagaggctgg ttgttaatcg tctactggca ctgcccaagg tgagttcctg
     2521 aagatgtaga cagcgcagcc ccttgaatac actagcaggg aagttacaga agccaacctt
     2581 cggctataca ttttctgggg agatccccaa tagcttgaga gtggggtaca gtcattctgt
     2641 gttctttatg ggggcatgac tagaaggcac aaagcagtga cattgttcct agcattgatc
     2701 tttagcattt aatatttttt tatactaact aaatatttta aaaccggtca agatgaccca
     2761 aggcatcttg ataccgggaa gatgtttaca ttagattttt tttttcataa tctaatgttt
     2821 tgagcttcaa gctttcattg ttgctaatgt tttgtggtgg atatctaagg gttagatgcc
     2881 aataggaaaa actttaagca gcaggtgagc tctctgttgt atcagtatta aagaatgatg
     2941 acagatgtaa ctgtccccaa ccaatctata acaagaccca aactaattcc tgtgaaacta
     3001 cataaagggc attatttatt ggtatttatg tttccagcat atcttataaa cctgtaataa
     3061 atactgtgct tggcccaaga aataacacct tatggtgtaa tagctcatac gtggcatgtt
     3121 ttaaaactta agtaaaaaca ttttggatgc cagtatgagg agactaaggc atagtccttt
     3181 gtgtaagatt ggtttcctgg cctcctttac ccagccaaga gagggaagag aaagtgtttt
     3241 ctctgcaggg tccctcatgt gctgtggatt tatgtcttgt ttcctgttgt tttgttttag
     3301 gacttttata gctgttataa cagtcatacc tgtattctca ggctctcggt gcaaggggtg
     3361 tacttaactt taaagtttaa ggatacaata tacatatact agagtcttgc ctgcaccctt
     3421 ccagaaataa tgctatcatc tctgaggatt gtagattctt gaggacttct tggtagattg
     3481 ctgcagttcc ttcttggcca acccttccta aagatgtatg tgtgtatgtg cacatgcgtg
     3541 tgttcatgtg cgcatgcgtg tgtatgtgtt ttcaaattgc ccatgtgata gcatggctca
     3601 gatttaaatg ccaaatgcat taaagatttg tataacagct gaggcattaa gcacgtttga
     3661 gctgaatgga ttctcacagt ggaagtagat actggttagc cgtcgacatc ttgacccctt
     3721 tctttagatt aggcttaaaa accatttcaa agtggcattt tgctaaaagt ttaggataag
     3781 tatgtactga catctaaaac atgattcgaa gtagtctgtg tttctcataa tctgtgatac
     3841 tattctgagt ccacagtgca atcttttttt accatcagtt tttctcagaa ggtgtctgac
     3901 tgtgactggt agccagtata actgcagatc tcagctggta aactaagtgc ttttatattt
     3961 gaaattgact tcataaagcc aataagcagt cctcagagca tggagatatg ctcaggtgac
     4021 tgtagaatgg cactgggtta tagaatatag aattaaggaa ccttgtattg tcttctgtta
     4081 aagtgtccca gagtttgaaa cttctaacaa gttccatttt atcctgtatc agtagaagct
     4141 gcatctccat ttgttagcac acacgctacc tgttgaggac ttcctagcat taagctccac
     4201 gccagttcta tgcataacca ttcgccagat actgctactg tggtttacag gagcctttct
     4261 gtcttgtgcc gcgatgcatg atcatcttgc tgcttgacag gtcctttgtg aggaattgga
     4321 actgtgtgtg ttaatagtac ctgtgtatga caagatgtaa aatacagacg agagagatgc
     4381 aaatgaatgg tgttcctgtc ttagaatatc taaagcttcc atgggttgta tgttttaact
     4441 gcctctttaa actgcacaga ataaatgaaa atgaaaacaa gtaaaaaaaa aaaaaaaaa
//
