LOCUS       NM_001271583             607 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus small integral membrane protein 10 like 1 (Smim10l1),
            transcript variant 2, mRNA.
ACCESSION   NM_001271583
VERSION     NM_001271583.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Watahiki A, Waki K, Hayatsu N, Shiraki T, Kondo S, Nakamura M,
            Sasaki D, Arakawa T, Kawai J, Harbers M, Hayashizaki Y and Carninci
            P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
REFERENCE   3  (bases 1 to 607)
  AUTHORS   Zambrowicz BP, Abuin A, Ramirez-Solis R, Richter LJ, Piggott J,
            BeltrandelRio H, Buxton EC, Edwards J, Finch RA, Friddle CJ, Gupta
            A, Hansen G, Hu Y, Huang W, Jaing C, Key BW Jr, Kipp P, Kohlhauff
            B, Ma ZQ, Markesich D, Payne R, Potter DG, Qian N, Shaw J, Schrick
            J, Shi ZZ, Sparks MJ, Van Sligtenhorst I, Vogel P, Walke W, Xu N,
            Zhu Q, Person C and Sands AT.
  TITLE     Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap
            screen to identify potential targets for therapeutic intervention
  JOURNAL   Proc Natl Acad Sci U S A 100 (24), 14109-14114 (2003)
   PUBMED   14610273
REFERENCE   4  (bases 1 to 607)
  AUTHORS   Tanaka TS, Jaradat SA, Lim MK, Kargul GJ, Wang X, Grahovac MJ,
            Pantano S, Sano Y, Piao Y, Nagaraja R, Doi H, Wood WH 3rd, Becker
            KG and Ko MS.
  TITLE     Genome-wide expression profiling of mid-gestation placenta and
            embryo using a 15,000 mouse developmental cDNA microarray
  JOURNAL   Proc Natl Acad Sci U S A 97 (16), 9127-9132 (2000)
   PUBMED   10922068
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC122520.2 and AA048533.1.
            
            Transcript Variant: This variant (2) contains an alternate exon,
            which results in a frameshift, compared to variant 1. The encoded
            isoform (2) is longer and has a distinct C-terminus, compared to
            isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.927312.1,
                                           SRR11927935.3986465.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-367               AC122520.2         45635-46001
            368-486             AC122520.2         48260-48378
            487-498             AC122520.2         51189-51200
            499-607             AA048533.1         1-109               c
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 64.03 cM"
     gene            1..607
                     /gene="Smim10l1"
                     /gene_synonym="2700089E24Rik"
                     /note="small integral membrane protein 10 like 1"
                     /db_xref="GeneID:381820"
                     /db_xref="MGI:MGI:1914379"
     exon            1..367
                     /gene="Smim10l1"
                     /gene_synonym="2700089E24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             176..445
                     /gene="Smim10l1"
                     /gene_synonym="2700089E24Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="small integral membrane protein 10-like protein
                     1 isoform 2"
                     /protein_id="NP_001258512.1"
                     /db_xref="CCDS:CCDS80626.1"
                     /db_xref="GeneID:381820"
                     /db_xref="MGI:MGI:1914379"
                     /translation="MGPADAPSALALRAVGPAAATPYGVFCKGLSRTLLAFFELAWQL
                     RMNFPYFYIAGSVILNIRLQGFSGNCCVFQASSRLMISLPSPFDY"
     exon            368..486
                     /gene="Smim10l1"
                     /gene_synonym="2700089E24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            487..593
                     /gene="Smim10l1"
                     /gene_synonym="2700089E24Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcctcggga agctgacagg aagaggcgga gcccacgccg ccccgcgcca cccggaggga
       61 gcggcggccg ctggcagtgg gggcgaaagc ggcggccgct tcgtcccggc cacggctcat
      121 ctggctcggg aactgcacgg agcttcggag accctcggcc tggtgggaca acgccatggg
      181 tcccgccgac gccccgtccg ccctagcgct cagggcagtg ggccctgcgg ccgccacccc
      241 gtatggtgtc ttctgcaagg ggctgtcccg caccctgctc gccttcttcg agctggcctg
      301 gcagctgcgc atgaacttcc cgtacttcta catcgcgggc tccgtgatcc tcaacatccg
      361 cctgcagggt ttctctggaa attgctgtgt attccaggct agctcaagac ttatgatctc
      421 tctgccatca ccttttgatt actaggttta ctgagctgtg tcagcaatag gcttcatatt
      481 tgccaggtga gactctgatg ggaccacctg ctcaaactcc tgccactcta tttctcctgc
      541 cttgatggac tgcaccttgg actgtgatct aaaataaagc ttgtctcctt taaaaaaaaa
      601 aaaaaaa
//
