LOCUS       XM_030253294           10366 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SMG7 nonsense mediated mRNA decay factor
            (Smg7), transcript variant X6, mRNA.
ACCESSION   XM_030253294
VERSION     XM_030253294.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030253294.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10366
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..10366
                     /gene="Smg7"
                     /gene_synonym="9430023P16Rik; mKIAA0250"
                     /note="SMG7 nonsense mediated mRNA decay factor; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 38 ESTs, 430 long SRA reads, 1 Protein, and
                     84% coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:226517"
                     /db_xref="MGI:MGI:2682334"
     CDS             4925..8191
                     /gene="Smg7"
                     /gene_synonym="9430023P16Rik; mKIAA0250"
                     /codon_start=1
                     /product="nonsense-mediated mRNA decay factor SMG7 isoform
                     X6"
                     /protein_id="XP_030109154.1"
                     /db_xref="GeneID:226517"
                     /db_xref="MGI:MGI:2682334"
                     /translation="MSLQSAQYLRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQKML
                     VTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFY
                     TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHSSTIVKPQSSSCSYICQHCLVHLGD
                     IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP
                     FPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL
                     EEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLAL
                     FMSFLGILCKCPLQNDSQESNNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWL
                     ISLLNSFHPREDDLSNTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
                     RRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQET
                     SVVESLATDGSPGLKSVLSTGRNPSNSCDSGEKPVVTFKENIKPREVNQGRSFPPKEV
                     KSQTELRKTPVSEARKTPVTQTPSQTSNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPP
                     PVAFSMGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQ
                     GPQQSQPPSQPPLTSLPAQPTAQSTSQLQVQALAQQQQSPTKVIPALGKSPPHHSGFQ
                     QYQQADASKQLWNPPQVQSPLGKIMPVKQSYYLQTQDPIKLFEPSLQPPVIQQQPLEK
                     KMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRAVMAQQPNMDRRSKRSPGVFRPEQ
                     DPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSVNQERYPNSSMFNEVYGKNLTTSSK
                     AELNPSVASQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNH
                     NSAPFSNFGPIGTPDNRDRRPADRWKTDKPAMGGFGVDYLSATSSSESSWHQASTPSG
                     TWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
                     "
ORIGIN      
        1 attatttatt ggagacatat gccctgaaca taaaaaggtt gctatgatca ttattttatt
       61 tagaatgaaa ttacattttg gtaaaaatat aacatgaatt tcaggaaaaa aaatccactg
      121 aatatttagc atactgcttg aaatataaat agagcaataa gacaagagaa agataaaaaa
      181 gagttatatg taaacaaaaa agaaaaatca aagtatctct acttgcaaat gtcataatac
      241 tgtactttaa agattctaca agaaaactct tagaccctct atccactttc atcaaaacag
      301 tagagcacaa aatctacaca caaacatcac tagccattta aatatagcaa taatgaactt
      361 tcttataaaa attaggaaaa attccattta caataatttt taaaatgctg tggaataaac
      421 tcaaccaagg aaatgcaaga cctctacaat gaaaactttg agatgcggca gcaagccttc
      481 ctctgcttgt gggctgacac aggagagtca agagggacca tcctgcagat tcaaccttca
      541 gagtcaagtg caatccaaac gaaactgcaa tgactctcct cacaaaaaag cagcaacaac
      601 aaattaaaaa gtacatatgg atggacagag atcacatagt ctaaccagtc ctaagcagaa
      661 agaataatgc cggaagtacc acagtactgg atcttcacat tatactaaag agccacagaa
      721 caaaaagtac gtgccactgg cagaaggaaa caaaggagac atgtaagcca gcacactaga
      781 actggggatc cacaagcaaa tctatatagc aataagacta tcaaaattat acatcaggaa
      841 aaagggtgct ggtcaccgtt tatagaaaaa tgaagcttga tacatatttc tttattgtgc
      901 acacaaaaaa aaatcaaacg taaaatggac caacagcatt agaggacctg aaactttgaa
      961 acaactagaa taaaacagga aaaacacctc aaagtgtagg catgggcaag ggatttctga
     1021 gaaggactct actaacacag agtataatcc ccatgggtta tgagactaca caaaactaaa
     1081 gacgtttcta cctcaaagaa aacagccact tgactgaaga cagagcctgc agaaaggagg
     1141 ggaaaacctt tgctaactac acatcaaatg ggaacaatag agcagtggct ctcaaccttc
     1201 ctaatgctgc tgtcccttta atacagttcc tcatgttgtt gcttcttcat aagtgtaatt
     1261 ttgctactgt tatgaatgat tatgtaaata cctgacatgc aggatgtctg atatgtgacc
     1321 cctgtgaaag gggcaagacc cacaggttga aaactgattt agaaaatgca cagaatcgca
     1381 aaaagtaaac agcaaagaca agtcatcagt gaacaggcca acgagcggga gaaacgggtc
     1441 tcagaatagg aaacagacgt aaagtgaggt ggcatacggt atcttcagcc atcagagaaa
     1501 tgcaaattaa aagaaaggct gttaagaaaa ccaatcacag ctgggcatgg tggcacgtgc
     1561 ctttaatccc agcacttggg aggcagaggc aggcaaattt ctgagttcga ggacagcctg
     1621 ggctacacag aaaaaccctg tctcaaaaaa cccccaaccc cccccccccc aaaaagaaaa
     1681 gaaaaccaat cacagcagac agtgggggtg catgccctaa atcccagccc ttgggaggcc
     1741 gagacaggca ctctctgtga atccatggcc aggttggtca gagagaccag gccaaccaat
     1801 cctacactga gagaaccagt ctgtaacaaa caaacaaaca aaacagacag aaaactaaaa
     1861 caaccaaaca aaaggaaaga aaaagaaaga agaaaacaga cctgctggtg atgatgtgga
     1921 gagtaaagga attcttatgc tttgtaggtg gtaatgtaag ctggcccagc ttctctggaa
     1981 gtcagtgtct aagtccccca agaaactaaa aataaaacta ccataaaagt tagctctgcc
     2041 attcttggga acaaaactta aagtcaacac accagagata ctggcacatc catatttatt
     2101 gttgcactag tccttatagc taagaaatag aactagttta tgtgtccatc agcagataag
     2161 aaaatataca taatggattt tttttcaatc gcaaaccccc tcggaaccag gttttttttt
     2221 tttttttttt ttgaaaaagc aaggaactgg agatcaaata ttaagaaaaa gaagccatac
     2281 tgaaaaagac aaataacatt ttctctcata cacagcatct agattaaaaa tgtgtatgtg
     2341 tcatgaaagt tcaaacagga ccatgaaaag ggaagaaaag gtctgtaggg agggaagcag
     2401 tggagaatct aatggaaatt cacaggacaa tgaaagcaga atggatgact aagaggggga
     2461 gagcacaagg aagagaggga agaaagtagt atggaggaaa tcaatgggga aggtagataa
     2521 aatatttgtg tgtgtatgtg tgccataatg gaattcatca ccctgaatac taactaaaaa
     2581 aaaagtagaa tatttgagta tatatagtag taacttccat tctttgactt ccagagttga
     2641 ggtagaaagc tacacaccag agatgtgaac agtttctcac taggtggctc tctttcccgt
     2701 gagtgggcgg tgcgttggcg ctggtggaag ataggggcca ttgtactgct gcaatcgccc
     2761 atacgtcata gcgcctcaca ctcgcgcttg cttgcagcat gagggggcat agttcacttt
     2821 ctatttcgtt aatgacatgc tgtccttgag aatgatgtcc aagtgggctg tactttcgtt
     2881 tcctgagaac agaaacacgt tccaaataaa cactgttcta ggttaatagg agttggattc
     2941 agagaaagac ctgtaaagcg attctttagg cagcatggaa aaaccggaag atatcaggta
     3001 cccaaaccaa aaccaagatc ccattgaaaa tgctggtttt aactatacag tgaggactgc
     3061 gttcttggat cttattctaa aacactttag gatagctgct tatataactt tcaacatcaa
     3121 ttgaaaataa aacctgtaaa atatcaataa ttacttcatt ccatcagaat gacttattct
     3181 acacgattcc acatcatcag gatccattat ttctatttta accctaaacc tgacacaaaa
     3241 tgcttaaaat attcgttctc aaaatggaaa attattttct taaactccct catgcagata
     3301 aatctagata cttttttttt atggcaagtt ctaaaacact gcagatgttt ttgaggaggg
     3361 ggtctttgga gatcaacctt cgatgacgga gcgtcttttc tctctgaggg tacctctgga
     3421 aagaacgtca tcagcctttc tgatcgctct ccattctaaa tgcctaagaa ctgcgtgtta
     3481 gcctcctagg ctgggttcga gctctcacta agtcgcctac gggaggtctc gccggtgata
     3541 tcgagtagga attaggcaag ggtcgaccgg ctacaaaaag tcgaacattc gcgatcgccg
     3601 gagccgcatc tcggttgtca tgtgcccgtc tcttccctta gggacccgct tctggcggga
     3661 tcccgctgcc cagcctcaaa cagtggtggg gaagcccctt ccctttcctc tgacttcgca
     3721 gcatcgccct cgctttctcg ttcccaccca ctcgccgccg gccttcataa cctgcctttt
     3781 cttctcgggc ccggccctct ccctacccgg ctcagatagg caacgatgga ggtggtttcc
     3841 acccttgggg gactggcaat gcctaaaatg aatgcttcgg ggtctccccc aatttttgct
     3901 gggagagtaa gggaggaaga aatggacttt cctactcgga taaccatttc gacttctggc
     3961 ttttaaaaag gcagggaatc caagtgggga atcctgggca gtttccaggg aacccgtttc
     4021 tctacgggag ggtcaccctg tctacacacg gcagttacta tgacaataca accacagcct
     4081 ccagtttcca tggcagcggc ctgcccaatc ggattggttt tcctttctat ttctccctgg
     4141 gctccgccct attccccccc ccccccccaa ccttctccca gagtgcccgg ggaggggcgg
     4201 ctgaaacggg ggaggcctct gcgtcactct ccggcgcgcg aggggacgac cggagtcgag
     4261 gaattggcgg gcggaactgt aggaggaagg ggtggcgttt ccggcgggga aagtggagga
     4321 gtgggaaaaa aaaaaaaaag aaagaaggaa ggaagtgaga agtgggcggg tggccgggcg
     4381 gaaggctttg agtgtgactc cgggctgctc tgggctcgat gtccgcggtg agccgggggc
     4441 cgcccccgcg cccgggagga acaggacgga gccttaggag gccgccgggc accagcaccg
     4501 gatcgttcgg ccggcgcgcg ggcaccgcac cgctcgccga tcccaagagg gagcgctaca
     4561 gagcggcgga aagcacccag agggaccggc gctgctgaag tctcgcgaga gcgaacccga
     4621 cttccttcct ctgcttctcc cctcctcttt ccccgcccct ttccccttct ttttcccccc
     4681 cccctccgga gccggagcgt ccctgcgccc cacaggccag agccgcagcc gctgccggag
     4741 ccgctccccc caactccctc cccctcgcct cactcactct cccccccccc caccccgcgc
     4801 caagcgagga ggagtcggag gagaggaaga tggcggcgac cgccagcacc cgcggggccg
     4861 cggggccgct ccgaggagcc tgagagaccc acggaggctt cgcggcgaga cgcggcggcg
     4921 gaggatgagc ctgcagagcg cgcagtatct ccggcaggca gaagtcctga aggctgaaat
     4981 gacagattct aagctgggtc cggctgaggt ctggacatcc aggcaagctc tgcaggactt
     5041 gtaccagaaa atgctagtta ctgatctgga atacgcttta gacaagaaag tagaacagga
     5101 tctctggaat catgccttta agaatcagat cacaacactg caaggccaag ccaagaatcg
     5161 agcaaaccca aatcgaagtg aagtccaggc aaacctttct ctgttcctag aggcagctag
     5221 cggcttctat actcagttat tacaggaact gtgtacggtg tttaatgtag atttgccatg
     5281 ccgtgtgaag tcttcccagt tgggaattat tagcaataaa cagacgcaca gcagcaccat
     5341 agtgaagcca cagtctagct cctgctccta catttgccaa cactgcctcg tccaccttgg
     5401 agacattgct cgatacagaa atcagactag ccaggcagag tcctactata ggcatgcagc
     5461 tcagcttgtc ccctccaatg gtcagcctta caatcagttg gctatcttag cttcttccaa
     5521 aggagaccac ctgaccacaa ttttctacta ctgcagaagc attgctgtga aattcccttt
     5581 cccagctgcc tccactaatc tacaaaaagc actttctaaa gcactggaaa gccgggatga
     5641 gttgaaaacc aagtggggtg tttctgactt catcaaggcc tttattaaat tccacggtca
     5701 tgtatacctg agtaagagtt tggaaaagct gagccctctt cgagagaagt tggaagaaca
     5761 gtttaagaga ctgctgttcc aaaaggcttt caactctcaa cagttagttc atgtcactgt
     5821 cattaacctg tttcaacttc atcatcttcg tgactttagc aatgaaacag agcaacacag
     5881 ttacagccaa gatgaacagc tgtgttggac acagttgctg gccctcttta tgtcttttct
     5941 cggcatcctg tgcaaatgtc ctctccagaa tgattctcag gagtccaaca atgcctaccc
     6001 ccttcctgca gtcaaggtct ccatggactg gctaagactc cgacctagag tctttcaaga
     6061 agcagtggtg gatgaaagac agtacatttg gccctggcta atttctcttc taaatagttt
     6121 ccatccccgt gaagatgatc tctcaaatac taatgccaca ccacttccag aggagtttga
     6181 attacaagga ttcttggctt taagaccttc tttcaggaac ttggattttt ccaaaggcca
     6241 tcagggtatt acaggagaca aagagggtca acaacgacga atacgacagc agcgtttgat
     6301 ctccataggg aaatggattg ctgataacca gccacggctg attcagtgtg aaaatgaggt
     6361 agggaaattg ttatttatca cagaaatccc agaattaata ctagaagacc ccagtgaagc
     6421 caaagagaac ctcatcctac aagaaacatc tgtggtagag tcactggcta cggatgggag
     6481 cccaggactg aaatcagtgc tgtctacagg ccgaaatcca agcaacagct gtgactcagg
     6541 agagaaacca gtggtcacct ttaaagagaa cattaagcca cgagaagtga accaaggaag
     6601 aagctttcct cccaaagagg taaaatccca gacagaacta agaaagactc cagtgtctga
     6661 agccaggaaa acgcctgtca ctcaaactcc aagtcaaacg agtaattctc agttcatccc
     6721 catccatcac cctggagcct tccctcctct tcccagccga ccaggattcc cgcccccaac
     6781 atatgttatc ccccctcctg tggcattttc tatgggctca ggttacacct tcccagctgg
     6841 tgtttctgtc ccaggaacct ttcttcagtc tacagctcac tctccagcag gaaaccaggt
     6901 gcaagctggg aaacagtccc acattcctta cagccagcaa cggccctctg gaccagggcc
     6961 aatgaaccag ggacctcaac agtcacagcc accttcccag ccacccctta catctttacc
     7021 agctcagcca acagcacagt ctacaagcca attgcaggtt caagctctag ctcagcaaca
     7081 gcaatcccct acaaaagtca taccagcttt ggggaaaagc ccgcctcacc actctggatt
     7141 ccagcagtat caacaggcag atgcctccaa acagctgtgg aatccccctc aggttcaaag
     7201 cccactaggg aaaattatgc ctgtgaaaca gtcctactac cttcagaccc aagaccctat
     7261 aaaactgttt gagccgtcat tgcaacctcc tgtaatacag cagcagcctc tagagaaaaa
     7321 aatgaagcct ttccccatgg agccatataa ccataatccc tcagaagtca aggtcccaga
     7381 gttctactgg gattcttcct acagcatggc cgataacaga gcagtaatgg ctcagcaacc
     7441 aaatatggac cgcaggagca aacggtcacc tggagtcttc cgtccagaac aggatcctgt
     7501 gcccaggatg ccatttgaga aatccttatt ggagaagcct tctgagctca tgtcacattc
     7561 atcttctttc ctgtccctca cggggttctc tgtcaatcag gaaagatatc caaacagcag
     7621 tatgttcaat gaagtgtatg gaaaaaacct gacaaccagc tccaaggcag aactgaaccc
     7681 ctcagtcgcc tcccaggaaa catcactgta ctcccttttt gaagggaccc catggtctcc
     7741 atcacttcct gccagttcag atcattcgac accagccagc cagtctcctc attcctctaa
     7801 cccaagcagc ctgcccagtt ctcctccaac gcataaccat aattctgctc cattctctaa
     7861 ttttggaccc attgggactc cagataacag ggataggcgg cctgcagata ggtggaaaac
     7921 tgataaacca gccatgggtg gttttggtgt tgattatctc tcagcaacgt catcatctga
     7981 gagcagttgg catcaggcta gcactccgag tggcacctgg acaggccacg gcccctccat
     8041 ggaggattcc tctgctgtcc tcatggaaag cctaaagtct atctggtcca gttccatgat
     8101 gcatcctggg ccctccgctc tggagcagtt gttaatgcag cagaagcaga aacagcagcg
     8161 gggacaaggt gccatgaacc ctccacactg aggccacagg agcaacccag ggaatgaagg
     8221 ctccataaac catggcatgt tgggtttgca ggactgaccc acacagtctc tgcaggtggc
     8281 agctctcttg tctgtttctt gctgtcgaga gggtgtaagt gttccaccag cccgctgagt
     8341 gtgcacgaaa tgttcgcagt gcaacaaaaa gaaaaaacca tcaggaactc tcgttccccc
     8401 ggggctttcc ggagggagag aggagctgct gtttgtccca ctcggttact gatagcacgc
     8461 ctctcacctt ctccaccgcg catgtcccca acacgtggga agtggaagct gagaagggaa
     8521 ggcagatggg agaaaccaat aggaacttct cagtcctttt ttcctctttg gggaataaaa
     8581 taggaatcca ttatgagtgc tttgctgact gagaatgtag ttgaaattat tcttaaacat
     8641 cttttattat tactctcagt agcaaaatat cacactgaat tcttccatac acaggcgtat
     8701 ttctagtcag tgtggagcaa agacagtccc gtttgctgct cctgtgagag gtcagtggtg
     8761 acaggacagg gaactgacct cttaagccag tgggagtgtt tcatagggag ggtacaaggc
     8821 ctcttagaag gttctgggag aggccttcct ccagcctgga aactccagca ggaaatgccc
     8881 ttcactctgt aggtgctcga gccccaatag aggatgcagt gtgggtagtg ctgctggcct
     8941 agaccagcag atggctgctg tacgatttca aattcatgtg gtggattcct acactttaca
     9001 gtagcgtagc aagcagtctc agaaggcagg ctagttcatt cacggcctgg aacccatttt
     9061 aataggtgga tgctttcagt gtggttcttt ttgttgagtt ggtttttgtg tccccatcct
     9121 gcttcccagc ctcttgcatc agtctccacc ctttagccat atgctgtacc gtagtcattg
     9181 ttttcttcct accgtgtaca acatctcacc acgaaacagc agcatggggc cagcacttgg
     9241 ggcccaaaag cctgaagtct gaagaggaag gaagcggcag tgcaagcgtc actgcagagg
     9301 agccgggcta tgcccagtca cagctcctgg ccttcacctc gaggatgaag ttgaaggcca
     9361 cagagacaga tgcacactgt gcacagaaga aaacacagca gatgccactt tggagagggc
     9421 aagagaaagg aataaactct atttgataat ttatattagg aggaaagagg actgaagatg
     9481 ttctgtgtag gaacagaaga acggacagca tttctgttag tcatttcctg gaaaagtaat
     9541 attttaatgg gaaattatgg aaacaatcta aatgtccaat tgctgtgcta gggtagggat
     9601 tattttctgg gaggtgtgtg tgtgtgtgcg cgcgtgtgtg tcccacacat ggctttctac
     9661 tctcccagag ggcaagggct aagtgtggga aatagtgtgg agcttagctg aaggacagct
     9721 gtagagcaaa gcacatccag gagccccagg tgtcactggg gtctgggcag ccccgaaatg
     9781 agatggggta aggtattgct cattgctctt cagaaagagt gcttgaagcc ccaggcttac
     9841 tctattgctc ttttagtttg acatggtatt tggatttttt ttcttttttc tttttttttt
     9901 tgtttttttg tttttttgtt ttgttttttg ggttttggtt tttgttttgt tttgtttttg
     9961 aaaggtctga aagtgaaacc cttcactaaa tggcaaaaga aactgtctgt gctgctccag
    10021 tccctccctg tgtccatctt tgtcctctcc ctgtcccttc cctgctacct tcacccagtt
    10081 tgtgtatgta agctctgcat tcagacagct gcagcattcc gaggttggaa atgtcactga
    10141 ttcttgcacc ttagaccagc caacaggttt accagttccc tccctgcagt acccacttcc
    10201 cagctatagc cccagtctgc atgagaattt ggtgtttgga atgtttatga ctctctcggc
    10261 ggggttcctc gccttgccat cctcactgtg gggtaatgaa gaaggggagg agaatcttca
    10321 tcaactggtt ttgtgtaata aactttcgtg ttttgttttg atttga
//
