LOCUS       NM_001359604             997 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus single-pass membrane protein with coiled-coil domains
            4 (Smco4), transcript variant 1, mRNA.
ACCESSION   NM_001359604 XM_011242408
VERSION     NM_001359604.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Taher,L., Collette,N.M., Murugesh,D., Maxwell,E., Ovcharenko,I. and
            Loots,G.G.
  TITLE     Global gene expression analysis of murine limb development
  JOURNAL   PLoS One 6 (12), e28358 (2011)
   PUBMED   22174793
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Kehrer-Sawatzki,H., Moschgath,E., Maier,C., Legius,E., Elgar,G. and
            Krone,W.
  TITLE     Characterization of the Fugu rubripes NLK and FN5 genes flanking
            the NF1 (Neurofibromatosis type 1) gene in the 5' direction and
            mapping of the human counterparts
  JOURNAL   Gene 251 (1), 63-71 (2000)
   PUBMED   10863097
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC155259.1 and AC155249.2.
            
            On Jan 13, 2018 this sequence version replaced XM_011242408.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146267.1, SRR7652917.963675.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-198               AC155259.1         40829-41026         c
            199-275             AC155259.1         8754-8830           c
            276-997             AC155249.2         127122-127843       c
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 4.95 cM"
     gene            1..997
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /note="single-pass membrane protein with coiled-coil
                     domains 4"
                     /db_xref="GeneID:170748"
                     /db_xref="MGI:MGI:3039636"
     exon            1..198
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /inference="alignment:Splign:2.1.0"
     exon            199..275
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /inference="alignment:Splign:2.1.0"
     exon            276..997
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /inference="alignment:Splign:2.1.0"
     CDS             357..536
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /note="UPF0443 protein C11orf75 homolog"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 4"
                     /protein_id="NP_001346533.1"
                     /db_xref="CCDS:CCDS22838.1"
                     /db_xref="GeneID:170748"
                     /db_xref="MGI:MGI:3039636"
                     /translation="MRQLKGKPKKETSKDKKERKQAMQEARQQITTVVLPTLAVVVLL
                     IVVFVYVATRPAVTE"
     regulatory      974..979
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /note="hexamer: AATAAA"
     polyA_site      997
                     /gene="Smco4"
                     /gene_synonym="Fn5"
                     /note="major polyA site"
ORIGIN      
        1 gccgggcgtc cgcagggtgc agggtgccgc gtggcccggc cccgcgttag ggttagggag
       61 caggattcgg cttcccggcg gcagagggcg cctggagccg cggtcccgcg ccccggagcc
      121 gcccgcgagg cgcgagcaga ggcgaggcgg gcgagcggcg gcccctgcca cgtacccggc
      181 cgtgcgcggc ggcggcagga ataactcagg tcacgctgac tggaaatcag ttgactgaca
      241 tcagtgaagc agtggttcct gagtttgaag aaaagaggtc tcctgcctgg acagaggagt
      301 gtgtgccttt ctccaagccg tctctggaca tatcttccca gcatcctcta acaaagatgc
      361 gtcaactcaa agggaagcca aagaaagaga cctccaagga caagaaggag cggaagcagg
      421 ccatgcagga ggcgcggcag cagatcacca ctgtggtgct gcccaccctg gctgtggtgg
      481 tgctcctcat tgtcgtgttt gtgtatgtgg ccacacgccc cgccgtcacc gagtgagcac
      541 gtccattctg ctttcctctg cagagatgtc cgaaatgcca agctctgagc aggagtgccc
      601 tgtctcctct ggtctttgac ttgatcaata tttctctact tttttggggg gtggggtggg
      661 gtggggatag ggaacatttt atcagtgaat gtgccattta cttgatggtc cacttcatgt
      721 gcctttcaga cttcaaagct gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtggcccttt
      781 ttctcctgaa atcgatgcat cgctgcccct gaggagagcc tctctgggtg atgctgttgg
      841 gatcagagtc gccctcccat ccagcagcat gcttcccggc tccacttcac aactttctaa
      901 ggggacagcc tttcttctct gtgcttgatg ggatttgaaa tatgttgact caaagtgaaa
      961 tatttatttt ttgaataaag gagataatag tcttaaa
//
