LOCUS       NM_001039558            2052 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus single-pass membrane protein with coiled-coil domains
            3 (Smco3), mRNA.
ACCESSION   NM_001039558 XM_003689395 XM_905537 XM_919423
VERSION     NM_001039558.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB624054.1, AK045581.1, AK047766.1 and AI846508.1.
            
            On or before Dec 1, 2013 this sequence version replaced
            XM_003689395.1, XM_905537.2, XM_919423.2, NM_001039558.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB624054.1, SRR1660811.225765.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                BB624054.1         1-24
            25-206              AK045581.1         2-183
            207-1622            AK047766.1         376-1791
            1623-1918           AK045581.1         1600-1895
            1919-2052           AI846508.1         18-151              c
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 66.72 cM"
     gene            1..2052
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /note="single-pass membrane protein with coiled-coil
                     domains 3"
                     /db_xref="GeneID:654818"
                     /db_xref="MGI:MGI:2443451"
     exon            1..94
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            95..2052
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..786
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 3"
                     /protein_id="NP_001034647.2"
                     /db_xref="CCDS:CCDS20656.1"
                     /db_xref="GeneID:654818"
                     /db_xref="MGI:MGI:2443451"
                     /translation="MAQSDFLYPQNPRRRQEVNRLHQQLLDCLSDSFQVTNKLTGVLN
                     THLGCRLAFIEMKSDGTIKENCDIIIQAMTKIQKELQKIDEALKDQLEPTLYRKLQDI
                     KERETEKIAIVQKVISVILGEATSAASAVAVKLVGSSVTTGIISKLVSVLAHIGTSLL
                     GSIGVAVLSLGIDMIIQAILGAVERTQLQAAIKSYEKHLEEFKAASAKYHHAITEVAT
                     AVKRQLR"
     regulatory      1427..1432
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1459
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /note="major polyA site"
     regulatory      1599..1604
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1621
                     /gene="Smco3"
                     /gene_synonym="C030030A07Rik"
                     /note="major polyA site"
ORIGIN      
        1 attccaccag aagcttccag atgagcccac gggataaccc ttcgacaaca ctgctgagac
       61 acggagagca cacacacttg ggaaacccag aaagaggcgt actgaaatat ggctcagagt
      121 gacttcctct acccacaaaa cccaaggagg cgacaggaag taaaccgcct tcaccagcag
      181 ctgctggact gcttgtctga cagcttccag gtcaccaaca agctcacagg ggttcttaat
      241 acccacttgg gttgcaggct ggccttcatt gaaatgaaaa gcgatggaac catcaaagaa
      301 aactgtgaca tcattatcca agccatgaca aaaatccaaa aggaactgca aaagattgac
      361 gaggcactga aagaccaact agagccaacc ctttatagga agctgcagga tattaaggaa
      421 agggagacgg agaagattgc catcgtgcag aaggtcattt ctgtcatcct gggagaagct
      481 acatctgcag ccagtgcagt ggctgttaaa ctggtgggct caagtgtcac aactggcata
      541 attagcaagc tggtctctgt gctagctcac atcgggactt ctctccttgg aagcattggc
      601 gttgccgtgc tcagcctcgg gatagatatg atcattcaag ccatcttggg agcagtggag
      661 aggacacagc ttcaggcagc catcaaaagt tatgagaagc acctggagga gttcaaggct
      721 gcctcagcaa agtaccatca tgctatcact gaggttgcca ctgctgtgaa gcgccagcta
      781 agatgaacag gcaggtgtct acactgggat actttgtgct gccctctctg gcaccatgct
      841 tatttcttta gggtaatttt ccatttgtct ccaacaacgt ggatacagat aaacaatttg
      901 gggtgcttgg gtcttaggtc aacagtgagt gtccaaacca gctgtagtag accctcaggg
      961 gataaagctc tatccagttt tcttaccctg ttgtcagaac cactgaggtg taaaggcatc
     1021 atagaccagc aggcacaggc tattgcttcc ttgttcgcag caaatgtctt caaatattcc
     1081 tgctaaatgg agagaccatt cccatttcct gtttcaaaca tcacttaatg tctaataaga
     1141 cagacttaat aacatctgac tagacacaga cctgtgacct tcaagtaaaa catacatagt
     1201 gctgttattt ttacccccag atcaaaaaca gttgtttgtg aactggaaaa gactgcaaaa
     1261 tcatatcaac attttcttcc accagattaa atacaattgt ctgccacccg gaaatgaagg
     1321 cagagcaacc tcaacaacat tatgttccag aatgaacgaa agccatgcat ctgcgaggtt
     1381 ctcctcagtt caaagcgtgg ctggatggat tgggaaagga tgagataata aatgttgtct
     1441 gtaatgcagt caatattgac cacctgtttg tcatctatct cttgagtggt caaagtgtgt
     1501 ggaacattgt aaacaaaaca aggcataaaa tgcagtgatc cctgcataaa atatgttaga
     1561 gtgaagaaaa aggctcactc cctgttaaga atttgttgat taaaggaaag taattaattt
     1621 ctatttttca gggggataat tttattttca gtaccaccaa aaagaggcag ctccctctgc
     1681 cccataaagc atttgcagac ctatgttaat tgcctcctga actcaggaaa aggagaggcc
     1741 atggaggcct attgatggaa cttagtttct ctagatacag catttgtttt ctaaaccttt
     1801 atctaaccat tctcactaag ccgtttttag ggtctacttc aaaaaccatt gtatgtaaca
     1861 atgttgagat agtcctggtt atagtcgttt ggtttttaac gcaaagacaa aaataaatca
     1921 ttggtataaa gtatccagta tatctcagga aaattttaca agcagatgaa gaattttaac
     1981 tagccacata acttttccaa atgtattaat ttctatgtta tcactggttt tataaattag
     2041 tttcaaaata tc
//
