LOCUS       NM_183283               1398 bp    mRNA    linear   ROD 24-MAY-2024
DEFINITION  Mus musculus single-pass membrane protein with coiled-coil domains
            1 (Smco1), mRNA.
ACCESSION   NM_183283 XM_001477664 XM_001479637
VERSION     NM_183283.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1398)
  AUTHORS   Rutkowski,T.P., Purcell,R.H., Pollak,R.M., Grewenow,S.M.,
            Gafford,G.M., Malone,T., Khan,U.A., Schroeder,J.P., Epstein,M.P.,
            Bassell,G.J., Warren,S.T., Weinshenker,D., Caspary,T. and
            Mulle,J.G.
  TITLE     Behavioral changes and growth deficits in a CRISPR engineered mouse
            model of the schizophrenia-associated 3q29 deletion
  JOURNAL   Mol Psychiatry 26 (3), 772-783 (2021)
   PUBMED   30976085
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126265.3.
            
            On Jun 17, 2019 this sequence version replaced NM_183283.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189679.1920.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849390
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               AC126265.3         146251-146429
            180-329             AC126265.3         147927-148076
            330-1398            AC126265.3         148484-149552
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 22.5 cM"
     gene            1..1398
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /note="single-pass membrane protein with coiled-coil
                     domains 1"
                     /db_xref="GeneID:69576"
                     /db_xref="MGI:MGI:1916826"
     exon            1..179
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..774
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /codon_start=1
                     /product="single-pass membrane and coiled-coil
                     domain-containing protein 1"
                     /protein_id="NP_899106.2"
                     /db_xref="CCDS:CCDS28119.2"
                     /db_xref="GeneID:69576"
                     /db_xref="MGI:MGI:1916826"
                     /translation="MTHETTTLISLKEAMKRVDNKLRALDTQFKELDVTKDNLTLRFE
                     HHSKTLASQAAQDEIWTAALALGFTSMELNIVYSYVIEVLICLHTRMLQKLPDLVRSL
                     PTLASVLRRKAKNKHVRLVWESVLQEYGLQERDVSALCTFFIVHGNKGEHYAANVRRM
                     YIKDVSFMITNMVKNQALQDGLLRAVQIIEKGKQAQDPENSRAPLKELMPPVKD"
     exon            180..329
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            330..1398
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1382..1387
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      1398
                     /gene="Smco1"
                     /gene_synonym="2310010M20Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggcagtact gagatgggat gttcccatcg ccgctgcctg ttgccgagtg gaaaacagca
       61 gaaggtttgg gatctcaaga gtgttcatcg tgctgcgtgc cgtttccttt ccttttcctc
      121 cttcagaaga tgacccatga gaccacaacc ctgatatcct tgaaggaagc aatgaaaaga
      181 gtagacaaca agctcagagc tctagacaca cagttcaaag aactggacgt caccaaggat
      241 aatctgacgc ttcgatttga acaccatagc aagactttgg caagccaagc agcccaggat
      301 gagatatgga cagcagctct ggcccttggg ttcacctcaa tggaactgaa tattgtatac
      361 agctatgtca tcgaggtcct tatttgcttg cacactcgaa tgcttcagaa actcccagac
      421 ctggtgagaa gtctcccgac cttagcctct gtccttagaa gaaaagccaa gaacaagcat
      481 gttaggcttg tgtgggagtc tgtcctgcag gagtacgggc tgcaggagag ggatgtctca
      541 gcactctgta ccttcttcat tgtacatggc aacaaaggag agcactatgc tgccaacgta
      601 agacggatgt acatcaaaga tgtttccttc atgatcacca acatggtaaa gaaccaggct
      661 ctacaggatg gattgcttag agctgttcag atcatcgaga aggggaaaca agcacaggac
      721 cctgaaaact caagggcacc cctaaaagag ttgatgcccc cagttaaaga ctaacctgtt
      781 acctttgacc cagcagttcc actctcggtc atttgtattt tttttccccc aagacagggt
      841 ttctctgtac ggccctggct gtcctggaac tcactctgta gaccaggctg gccttgaact
      901 cagaaatcca cctgcctctg cctcccaagt gctgggatta aaggcgtgcg ccaccactgc
      961 ccggcggtca tttgtatttt aaaaaccaaa aaaatgcata atttaatttt tataggctta
     1021 ttttatagca aaagtggaag gaacattaaa gaaattatga caaatggata caatgtacat
     1081 tgtgtgtgta gccatatttg aaaaagaagc aaatatttta taatgaagta gaatttgggg
     1141 tgtagcccag agtacatttt tttttttttt ttttggtttt tcgagacagg gtttctctgt
     1201 gtagtcctgg ctgtcctgga actcactctg tagaccaggc tggcctcgaa ctcagaaatc
     1261 agcctgcctc tgcctcccga gtgctgggat taaaggcgtg cgccaccacc acccagctac
     1321 attttttttt tgtatgtatg aggccctgag ttcaatccct gataccacca aatacataat
     1381 aaagaaattt atatggaa
//
