LOCUS       NM_025891               1743 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus SWI/SNF related BAF chromatin remodeling complex
            subunit D3 (Smarcd3), mRNA.
ACCESSION   NM_025891 XM_489079
VERSION     NM_025891.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Xu,J., Li,X., Chen,W., Zhang,Z., Zhou,Y., Gou,Y., Lv,C.A., Jin,L.,
            Qiu,X., Ma,S., Wu,Q.Q., Liu,T., Mi,L., Yang,Z., Yu,T., Pan,X.,
            Feng,Y., Shan,P. and Meng,Z.X.
  TITLE     Myofiber Baf60c controls muscle regeneration by modulating
            Dkk3-mediated paracrine signaling
  JOURNAL   J Exp Med 220 (9) (2023)
   PUBMED   37284884
  REMARK    GeneRIF: Myofiber Baf60c controls muscle regeneration by modulating
            Dkk3-mediated paracrine signaling.
REFERENCE   3  (bases 1 to 1743)
  AUTHORS   Boogerd,C.J., Perini,I., Kyriakopoulou,E., Han,S.J., La,P., van der
            Swaan,B., Berkhout,J.B., Versteeg,D., Monshouwer-Kloots,J. and van
            Rooij,E.
  TITLE     Cardiomyocyte proliferation is suppressed by ARID1A-mediated YAP
            inhibition during cardiac maturation
  JOURNAL   Nat Commun 14 (1), 4716 (2023)
   PUBMED   37543677
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1743)
  AUTHORS   Ferguson,L.P., Gatchalian,J., McDermott,M.L., Nakamura,M.,
            Chambers,K., Rajbhandari,N., Lytle,N.K., Rosenthal,S.B.,
            Hamilton,M., Albini,S., Wartenberg,M., Zlobec,I., Galvan,J.A.,
            Karamitopoulou,E., Vavinskaya,V., Wascher,A., Lowy,A.M.,
            Schurch,C.M., Puri,P.L., Bruneau,B.G., Hargreaves,D.C. and Reya,T.
  TITLE     Smarcd3 is an epigenetic modulator of the metabolic landscape in
            pancreatic ductal adenocarcinoma
  JOURNAL   Nat Commun 14 (1), 292 (2023)
   PUBMED   36653361
  REMARK    GeneRIF: Smarcd3 is an epigenetic modulator of the metabolic
            landscape in pancreatic ductal adenocarcinoma.
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1743)
  AUTHORS   Wang,Y., Elsherbiny,A., Kessler,L., Cordero,J., Shi,H., Serke,H.,
            Lityagina,O., Trogisch,F.A., Mohammadi,M.M., El-Battrawy,I.,
            Backs,J., Wieland,T., Heineke,J. and Dobreva,G.
  TITLE     Lamin A/C-dependent chromatin architecture safeguards naive
            pluripotency to prevent aberrant cardiovascular cell fate and
            function
  JOURNAL   Nat Commun 13 (1), 6663 (2022)
   PUBMED   36333314
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1743)
  AUTHORS   de la Serna,I.L., Carlson,K.A. and Imbalzano,A.N.
  TITLE     Mammalian SWI/SNF complexes promote MyoD-mediated muscle
            differentiation
  JOURNAL   Nat Genet 27 (2), 187-190 (2001)
   PUBMED   11175787
REFERENCE   7  (bases 1 to 1743)
  AUTHORS   Zhang,H.S., Gavin,M., Dahiya,A., Postigo,A.A., Ma,D., Luo,R.X.,
            Harbour,J.W. and Dean,D.C.
  TITLE     Exit from G1 and S phase of the cell cycle is regulated by
            repressor complexes containing HDAC-Rb-hSWI/SNF and Rb-hSWI/SNF
  JOURNAL   Cell 101 (1), 79-89 (2000)
   PUBMED   10778858
REFERENCE   8  (bases 1 to 1743)
  AUTHORS   Kim,J., Sif,S., Jones,B., Jackson,A., Koipally,J., Heller,E.,
            Winandy,S., Viel,A., Sawyer,A., Ikeda,T., Kingston,R. and
            Georgopoulos,K.
  TITLE     Ikaros DNA-binding proteins direct formation of chromatin
            remodeling complexes in lymphocytes
  JOURNAL   Immunity 10 (3), 345-355 (1999)
   PUBMED   10204490
REFERENCE   9  (bases 1 to 1743)
  AUTHORS   Phelan,M.L., Sif,S., Narlikar,G.J. and Kingston,R.E.
  TITLE     Reconstitution of a core chromatin remodeling complex from SWI/SNF
            subunits
  JOURNAL   Mol Cell 3 (2), 247-253 (1999)
   PUBMED   10078207
REFERENCE   10 (bases 1 to 1743)
  AUTHORS   Wang,W., Xue,Y., Zhou,S., Kuo,A., Cairns,B.R. and Crabtree,G.R.
  TITLE     Diversity and specialization of mammalian SWI/SNF complexes
  JOURNAL   Genes Dev 10 (17), 2117-2130 (1996)
   PUBMED   8804307
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK019064.1, AK005094.1 and BC060525.1.
            
            On or before Oct 12, 2005 this sequence version replaced
            XM_489079.2, NM_025891.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC013122.1, AK005094.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                AK019064.1         17-112
            97-101              AK005094.1         45-49
            102-596             BC060525.1         1-495
            597-597             AK005094.1         544-544
            598-1743            BC060525.1         497-1642
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 11.93 cM"
     gene            1..1743
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /note="SWI/SNF related BAF chromatin remodeling complex
                     subunit D3"
                     /db_xref="GeneID:66993"
                     /db_xref="MGI:MGI:1914243"
     exon            1..222
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..1596
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /note="BRG1-associated factor 60C; 60 kDa
                     BRG-1/Brm-associated factor subunit C; mBAF60c; SWI/SNF
                     related, matrix associated, actin dependent regulator of
                     chromatin, subfamily d, member 3"
                     /codon_start=1
                     /product="SWI/SNF-related matrix-associated
                     actin-dependent regulator of chromatin subfamily D member
                     3"
                     /protein_id="NP_080167.3"
                     /db_xref="CCDS:CCDS19126.1"
                     /db_xref="GeneID:66993"
                     /db_xref="MGI:MGI:1914243"
                     /translation="MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMG
                     PPGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQGQGQPVPTAPARSRSAKRRK
                     MADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLY
                     ISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVIELDKDLYG
                     PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLH
                     TQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLL
                     PPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKI
                     HETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFY
                     HQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT"
     exon            223..434
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            435..477
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            478..600
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            601..723
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            724..819
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            820..921
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            922..1083
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1181
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1317
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1440
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1542
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1725
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1704..1709
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /note="hexamer: ATTAAA"
     polyA_site      1725
                     /gene="Smarcd3"
                     /gene_synonym="1500001J14Rik; 2210409C08Rik; BAF60C"
                     /note="major polyA site"
ORIGIN      
        1 gggccccctc cccactccgc tcgagtagaa gtgtgagaga gcccagcagg actcagaggg
       61 gagagttgga ggaaaaaaaa ggcagaaaag ggaaagaaag aggaagagag agagagagtg
      121 agaggagccg ctgagcccac cccgatggcc gcggacgaag ttgccggagg ggcgcgcaaa
      181 gccacgaaaa gcaaactttt tgagtttctg gtccatgggg tgcgccccgg gatgccgtct
      241 ggagcccgaa tgccccacca gggggcgccc atgggccccc cgggctcccc gtacatgggc
      301 agccccgcgg tacgacccgg cctggccccc gcgggcatgg agcccgcccg caagcgagca
      361 gcgcccccgc ccgggcagag ccaggcacag ggccagggcc agcccgtgcc caccgcccca
      421 gcgcggagcc gcagtgccaa gaggaggaag atggctgaca aaatcctccc tcaaaggatt
      481 cgggagctgg tacccgagtc ccaggcttac atggacctcc tagcatttga gaggaaactg
      541 gatcaaacca tcatgcggaa gcgggtggac atccaggagg ccctgaagag gcccatgaag
      601 caaaagcgaa agctgcgcct ttatatctcc aatactttta accctgcgaa gcctgatgcg
      661 gaagactctg atggcagcat tgcctcctgg gagctgcggg tggaggggaa gctcttggat
      721 gatcctagta agcagaagag gaagttttct tccttcttca agagtttggt cattgagttg
      781 gacaaagacc tttatggccc agacaaccac cttgttgagt ggcaccggac acccacaacc
      841 caggaaacag atgggttcca agtgaagaga ccaggggact tgagtgtgcg ctgcaccctg
      901 ctcctgatgc tggactatca gcctccccag ttcaaattgg acccccgctt agcccggctg
      961 ctggggttac acacacagag ccgctcagcc attgtccagg cactgtggca gtatgtgaag
     1021 accaacaggc tacaggactc ccatgacaag gagtacatca atggcgacaa gtatttccag
     1081 cagatttttg actgcccccg cctaaagttc tctgagattc cccagcgcct cacagccctg
     1141 ctgctgcccc ctgaccccat tgtgatcaac cacgtcatca gcgtggaccc atcagaccag
     1201 aagaagacag cgtgctatga catagatgtg gaggtggagg aaccgctgaa agggcagatg
     1261 agtagcttcc tcctgtccac ggccaaccag caggagatca gtgctctgga cagtaagatc
     1321 catgagacga ttgagtccat aaaccagctc aagatccaga gggacttcat gctaagtttc
     1381 tccagagacc ccaaaggcta cgtccaagac ctgctccgct cccagagccg tgatctcaag
     1441 gtgatgacag atgtggcagg gaaccccgag gaagaacgca gggctgagtt ctaccaccag
     1501 ccctggtccc aggaagccgt tagccgctac ttctactgta agatccagca gcgcaggcag
     1561 gagctggagc agtcgctggt cgtgcgcaac acctaggagc ccgtgaacaa gcgtcagggt
     1621 ggaccagcca ctccgcccag cacaggccct gggctctgga ctccccctct cgcgctgtgc
     1681 ggaaggtggg gagggctgga tggattaaag gtcacgtaac agacaaaaaa aaaaaaaaaa
     1741 aaa
//
