LOCUS       NM_174992               1220 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus small cell adhesion glycoprotein (Smagp), transcript
            variant 1, mRNA.
ACCESSION   NM_174992
VERSION     NM_174992.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1220)
  AUTHORS   Yorgan,T.A., Peters,S., Amling,M. and Schinke,T.
  TITLE     Osteoblast-specific expression of Panx3 is dispensable for
            postnatal bone remodeling
  JOURNAL   Bone 127, 155-163 (2019)
   PUBMED   31202927
REFERENCE   3  (bases 1 to 1220)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 1220)
  AUTHORS   Tarbe,N.G., Rio,M.C. and Weidle,U.H.
  TITLE     SMAGP, a new small trans-membrane glycoprotein altered in cancer
  JOURNAL   Oncogene 23 (19), 3395-3403 (2004)
   PUBMED   15021913
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ053067.1, CJ042753.1, CJ065989.1, AC123724.9, BG067486.2 and
            BX635258.1.
            
            On Oct 18, 2013 this sequence version replaced NM_174992.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1). Both variants 1 and
            2 encode the same isoform.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC004728.1, BQ956470.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849378,
                                           SAMN00849380 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                CJ053067.1         4-51
            49-192              CJ042753.1         2-145
            193-356             CJ065989.1         105-268
            357-382             AC123724.9         95250-95275         c
            383-719             CJ042753.1         146-482
            720-1209            BG067486.2         1-490               c
            1210-1220           BX635258.1         3-13                c
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 56.37 cM"
     gene            1..1220
                     /gene="Smagp"
                     /note="small cell adhesion glycoprotein"
                     /db_xref="GeneID:207818"
                     /db_xref="MGI:MGI:2448476"
     exon            1..382
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     exon            383..451
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     CDS             418..711
                     /gene="Smagp"
                     /note="isoform 1 is encoded by transcript variant 1; small
                     cell transmembrane and glycosylated protein"
                     /codon_start=1
                     /product="small cell adhesion glycoprotein isoform 1"
                     /protein_id="NP_778157.2"
                     /db_xref="CCDS:CCDS27842.1"
                     /db_xref="GeneID:207818"
                     /db_xref="MGI:MGI:2448476"
                     /translation="MNNLPATPSPEELMTTPVFQAPETLSPQAEEASTALIAVVITVV
                     FLTLLSVVTLIFFHLYKNKGSYVTYEPAEGEPSAILQMETDSAKGREKEEYFI"
     exon            452..532
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     exon            533..1220
                     /gene="Smagp"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1179..1184
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Smagp"
                     /note="hexamer: ATTAAA"
     polyA_site      1220
                     /gene="Smagp"
                     /note="major polyA site"
ORIGIN      
        1 ggcctttcct cccgggggaa cctgctgagg gcggccccga gctccttcct gtccctccca
       61 ccgcggtccg ggctcggcgg ccgctcggcg cggggtcccg ggcgcggctc cggcgactct
      121 cggccgctcc caccccggcg agttcaaaag gacgcgcggc gcccggccct gcccgcccgt
      181 cggactggaa aggtgagcgc gctgcgcgga agcccggagc ccgcactcgg ccgccgcgcg
      241 cctgcgacct gacccgcacg ggtactgcgc ggctgcaggg acactcgacg gccagggcgc
      301 gggcccgggg cacgcgggat ccccggggag cggggcgcac ccagcggacg gctcggcggg
      361 gctcctggcc ctggaagccc agatctgacc ctacgaaata gcctgccctc agcaacgatg
      421 aacaacctac cggccacacc ttctcctgaa gaattgatga ccacgccggt ttttcaggcc
      481 cctgagaccc tgtccccaca agctgaagag gccagcacag cgctcattgc agttgttatc
      541 accgtggtgt tcctcaccct gctctcggtg gtgaccttga tcttctttca cttgtacaag
      601 aacaaaggca gctacgtcac ctatgagcct gcagaagggg agcccagcgc catcctccag
      661 atggagactg actcagccaa gggcagagag aaggaagagt acttcatcta atgcttccca
      721 ggctggaggg gccaattctt ggctccaaca ctaagccgct gcctctgtag ttagggaacg
      781 tttgctctaa agccagggag tggcgttggg tgatactggc acatccactc acctcccagg
      841 acacagcccc caataccgga atcactgact ccagggtcca gagacacgga gaaagctgtt
      901 catgatgctg ggccttgata aggacagtgc tcgaaaccga ccaccaaaga ggggccatgc
      961 ctgagttgga agtgaggtca catgctggtc cactttgtcc cctccctagt tgacgaccaa
     1021 tagccccagt cagtgctatc cagtctttct ggaggcagga caccacaggg aggggtcaga
     1081 ccagggaggg gataggagtc tgagaatgtt actgcctttg tttgatctga gccccactgt
     1141 tccccaatca gcctcaaact tctactgttt ttatcctaat taaacttatg aaaatcagat
     1201 tttcattttc aagaactaaa
//
