LOCUS       XM_006522352            5812 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SLX4 structure-specific endonuclease
            subunit homolog (S. cerevisiae) (Slx4), transcript variant X8,
            mRNA.
ACCESSION   XM_006522352
VERSION     XM_006522352.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006522352.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5812
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..5812
                     /gene="Slx4"
                     /gene_synonym="Btbd12; D16Bwg1016e"
                     /note="SLX4 structure-specific endonuclease subunit
                     homolog (S. cerevisiae); Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 207 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 26 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:52864"
                     /db_xref="MGI:MGI:106299"
     CDS             177..5117
                     /gene="Slx4"
                     /gene_synonym="Btbd12; D16Bwg1016e"
                     /codon_start=1
                     /product="structure-specific endonuclease subunit SLX4
                     isoform X3"
                     /protein_id="XP_006522415.1"
                     /db_xref="GeneID:52864"
                     /db_xref="MGI:MGI:106299"
                     /translation="MCSISEAAVGQQNALSLVKFLNNLFSYGSKLKEDIKVTWRGESA
                     PNGNSQPLPSCFTTTGVPSPSKPRVSELVLQRMKQFKRADPERLRHASEESPQKTALG
                     DDVPRSPPEETVGENEYKLDATDSDAAMALALQQEFRREEASSHHDSLEEKGLFFCQM
                     CQKNLSAMNVTRREQHVNRCLDEAEKAQRPASPRIPDCPICGKPFLTTKSRISHLKQC
                     AVRMEVGPQLLLQAVRLQTAQPEVDGSPQVPSFSNNVGGLKRKGVTTKREPRRRKVNK
                     PEAPSEDLLVAMALSRSEVEHCPVVPPLRLENAFSEKIRLGAEKKSRKKRPPVCPPQL
                     VTQDSETTGRQIEDRVAQLLSEEAELSCTPPLLASKISKEELEPAGWRARLPEGKRNF
                     LWELSALTGAWAEESFYTVGLFPPIVSQCPSKEPQLPLELPKQGEPSPRRPPASQSSL
                     PVSHSPKIRLLSSSQRERQALQDLVDLAVEGLSSSPQPGSRGVPTGLDLVPSSLPLTG
                     FVLPCKKTLKKDDSASLSLGLLVTDFGAMVNNPHLSDVQFQLDSGEVLYAHKFVLYAR
                     CPLLIQYVSTESFSSEEDGDLTQRALLSDVSSEAAHAFLNYLYMADTDMPPSLVPDLR
                     SLALRFGVSDLVQLCEQVPAVVDLEGEQPEETSEDCESRAETFLELLRSVWVDNEEEV
                     ETLLKPELCEEERERVNEAEMEEIYEFAATQRKLLQWGRAADPDGSTNPHGEDGAVSE
                     PSLAGVQSNRQLENTEHMESSGLEKEEALASWEQEGHSTPLQDQCPDWAGKAEAQDAL
                     GEATDDPSFCSRHRRGKECLPLHPNKAHGCKQPLPSNPRVSSELSQITVDHEEQSDHV
                     RETQADMAQAPTPHSCSLVSQSSVDGSPSQSWLHLYHTSHLSPSVSQSHSSISRVASP
                     RSLSPTTPTKQRRGSNIVTLRKDAGHHRGQQSSPIAGHRNRGILISPAKSPPIDLTQS
                     VPEPLSPRAQDPLHFVKKEDEVILLLDSDEELEHTKTESVSKDSPEGRKVPEFSPRSS
                     ELFSVIDVEEDHEHFQSPLKREAGLQHGEEGQLGNQSALGCRDIPWLLCSQKTSLDED
                     SATDTSWLVPATPGVSRSRDCSSQTQIKSLKTRIPSDETAQQTPRPNLERRTMLETAQ
                     QFSVIMPHTQPITLGAFDSGRQAYRSPSHPYPRHHRLSSSQPSCPGPDFTRWSQKSSA
                     PRPCLPNLPAADDVVEVGDSDDEVASHQGNSSPVLDGDPPGPMGDYCWNEPLSPIPID
                     HLNLERTGPLTTSSPSSQVLEALHSDDCHSPGLGTTPIRGSCGTLRESQERSSLAGSP
                     EALWDDWNEEEGQSPEAPPVAQMLSTRTRKPDRPETPKGANQKKNLPPKVPITPMPRY
                     SIMETPVLKKELDRFGVRALPKRQMVLKLKEIFQYTHQTLESDSEDEVQSPQIPAELP
                     CRQASTTETCNPSRSGSYTQLKATAGLRTQRSKGPTKSKSLQHQEKQLNESISHPNRL
                     PTGEPSHPDGDAQLPASQESMATSVDGSDNSFSSKSSSAEFGAAFEYSDEDKDEEVGV
                     TASQAAIQAADTEEAVRRYIRSKPALHRQVLRYQPVELAELQAELKQNGIPVAMGKLS
                     DILDAQCITFTTAAARKEKLKHKRRQPSGRKKKDQK"
ORIGIN      
        1 gatcatgcgc ctgcgcactc gtcattctct gctcgcaagc ctcagggcgc aagcgcagcc
       61 ccgcgcggtt ctccgttaag aaggtgcggc tgaagcgcgg gagatataaa attagatgaa
      121 cctacgccct ttatcactgt ggagatcttg gagaatcacc tgatcacaga gttcacatgt
      181 gttctatctc agaggcagct gttggacaac aaaatgctct ctcacttgtg aagtttttaa
      241 acaacttatt tagctacggg tccaaattga aggaagatat aaaagtcaca tggagaggag
      301 agagtgctcc caatggcaac tcccagcctc ttccttcctg tttcacgaca actggtgtac
      361 caagtccctc caaacccaga gtctcagagc tggttctgca acggatgaag cagttcaaga
      421 gagcagaccc tgagcgcctg agacacgcct cagaagaatc cccccaaaag actgcactgg
      481 gagacgatgt cccaaggagc cctccagagg agacagtggg agaaaatgag tataaacttg
      541 atgccacaga cagtgatgct gcaatggccc tggccttaca gcaggagttt agaagggagg
      601 aagcatcctc acaccatgac agcctggagg agaaggggtt gttcttctgt caaatgtgtc
      661 agaaaaacct ctcagcaatg aatgtaaccc ggagggagca acatgtgaac agatgcctag
      721 atgaggcaga gaaggcacag agacctgctt cacctcggat ccctgattgc ccaatatgtg
      781 ggaaaccgtt cctcaccacc aagagccgaa tcagtcactt gaagcagtgt gcggtgagga
      841 tggaagtggg tccccaactc ctgcttcagg ctgtgaggct acagacagct cagccagagg
      901 tggatggcag ccctcaggta cccagtttca gcaacaacgt tggaggtttg aaacggaaag
      961 gagtcaccac caaaagggag ccaaggagga ggaaagtcaa taagcctgag gctccgtctg
     1021 aagatctgtt ggtggccatg gctctgtctc gctctgaggt ggagcactgt ccagttgtgc
     1081 ccccgctcag actggaaaat gctttttctg agaagataag gctaggagca gagaagaaaa
     1141 gtcgcaagaa gagacccccg gtgtgtcccc cacagttggt aacccaagac tctgagacca
     1201 caggtagaca gattgaagat cgtgttgccc agcttctgtc agaggaagca gaactatctt
     1261 gcaccccacc acttcttgcc agcaagattt ctaaggaaga attggaacct gcaggctggc
     1321 gagcacggct gcctgaaggg aagcggaact ttctgtggga actcagcgct ctcacaggag
     1381 cctgggctga ggagtccttc tacacagtgg gactgtttcc tccaattgtg tcccaatgcc
     1441 cttccaagga accccagcta ccattggagc tgcccaagca aggagagccg agtccacggc
     1501 ggccacctgc ttcccagagc agccttcctg tgagccacag ccccaagatc cggctgctgt
     1561 cctccagcca gagggagcgt caagcccttc aggaccttgt ggacttggca gtggaagggc
     1621 tgagctctag cccacagccc gggagtcggg gcgtacccac agggttggac ctggtaccta
     1681 gcagccttcc gctgacgggg tttgtccttc catgtaagaa gaccctgaag aaggatgaca
     1741 gtgcctcact ctctcttggg ttattggtga cagactttgg ggccatggtc aataatccac
     1801 acctgagtga tgtccagttc cagcttgaca gtggagaggt gctttatgca cacaagtttg
     1861 ttctttatgc gagatgccca cttcttattc agtatgtaag cactgaaagc ttttcttctg
     1921 aagaggacgg ggatctgacc cagcgtgctc tgctgagtga tgtgagctcg gaggccgccc
     1981 atgcatttct gaactacctc tacatggcag acactgacat gcctcccagc ctggttccgg
     2041 atctgcgttc cctggcccta aggtttggtg tgagtgacct tgttcagctg tgtgaacaag
     2101 tgcccgccgt ggtggactta gagggagaac agccagaaga gaccagtgag gactgtgaaa
     2161 gccgagcaga gactttcctg gaactcctga ggtcggtgtg ggtagacaat gaggaggaag
     2221 tggagactct gctgaaacct gagctctgtg aagaagagag agaaagagtg aatgaagcag
     2281 aaatggaaga gatatatgaa tttgctgcta cgcagaggaa gcttctccag tgggggagag
     2341 cagcagaccc agatgggagc actaacccgc atggggaaga cggtgcagtt tctgagcctt
     2401 ccctggcagg tgtccagagt aacagacagc tagaaaatac agagcacatg gagtcatctg
     2461 ggttagaaaa agaagaggca ctagccagct gggaacaaga aggacattcc actccactgc
     2521 aggaccagtg cccagactgg gcagggaaag cagaggccca ggatgcattg ggggaggcaa
     2581 ctgacgaccc cagcttctgc agccgccaca ggagggggaa agagtgcttg cctttgcacc
     2641 caaacaaggc ccatggctgc aaacagcccc ttccatcaaa tccaagagtg tcatctgaac
     2701 tgtcacaaat aacagttgat catgaagagc agagtgacca tgtcagggag acgcaggcag
     2761 acatggccca ggcacctact ccacactcct gcagccttgt gtcacagtct tctgtggatg
     2821 gaagtcccag ccagtcatgg cttcacctat accacacaag tcatttgtcc ccctcagtgt
     2881 cccagtcaca cagtagcatt tccagggtgg catccccaag atcactgtct ccaactacac
     2941 caactaagca gaggaggggc agtaacattg tcacattacg gaaagatgct ggccaccaca
     3001 gaggccaaca aagtagcccc atagcgggac acagaaatag gggcatcctg atttccccag
     3061 caaagtctcc acccattgac ctcacacagt cagtacccga gcccctgagc cccagggccc
     3121 aggatcctct gcatttcgtg aaaaaggagg atgaggtcat cctgttactg gactcagatg
     3181 aggagctgga gcacaccaag acagagtcag tttctaaaga ttccccagaa ggaaggaaag
     3241 ttccagaatt tagccccagg tcctctgaac tgttttcagt cattgatgtt gaagaagatc
     3301 atgaacattt ccaaagccca ctgaagagag aggccgggct acagcacggg gaggaaggac
     3361 agctgggaaa ccagtctgcg ctgggctgca gagacatccc ctggctgctc tgcagccaga
     3421 aaaccagcct ggatgaggac agtgctacag acacctcttg gctggtgcct gccactccag
     3481 gggtcagcag gagtcgtgat tgctcatcac agacccaaat caaaagcctt aagaccagga
     3541 ttccgtcaga tgagactgct cagcaaacac ctagacctaa cttagaacgc aggaccatgc
     3601 tggaaacagc ccagcagttc tctgtgatca tgccacacac acagcctatt actctaggag
     3661 cctttgacag cggaagacag gcctacagaa gcccttccca tccctacccc aggcaccaca
     3721 gactctcttc ttcacagcca tcatgtcctg gccctgattt taccaggtgg tcccagaaat
     3781 cttccgcacc tagaccatgc ctgccaaatc tgcctgcagc tgatgatgtg gtagaagttg
     3841 gggacagtga tgatgaggtg gcttcccatc aaggaaacag cagccccgtg ctagatggtg
     3901 accccccagg tcccatgggt gactactgtt ggaatgagcc tctctcacca attccaattg
     3961 accacttgaa tctggagcgg accggccccc tgaccacaag cagtcccagc agtcaggtcc
     4021 tggaggcttt gcacagtgat gactgccact ccccgggact tggtaccacc cccatccgag
     4081 gaagctgtgg tacgctgaga gagtctcagg aacggtcctc actggctggc tctccagagg
     4141 ctctgtggga cgactggaat gaggaggaag gacagtctcc agaggcccca cctgtggctc
     4201 aaatgctgag taccagaact cggaagccag acaggccaga gacaccaaaa ggtgctaacc
     4261 agaaaaagaa cttgcctccc aaagtgccta taactccaat gccaaggtat tcgatcatgg
     4321 agaccccggt gctgaagaaa gaactggaca ggtttggagt ccgtgctctg cccaaacgcc
     4381 agatggttct aaaactgaag gagattttcc agtacactca ccagactctg gagtcggact
     4441 ctgaggatga ggtccagtcc ccccagatac ccgcagaact accttgtcgc caggcatcta
     4501 ccactgagac ctgcaaccct tcaaggtcag gaagttacac ccagctcaag gccactgcag
     4561 gtcttaggac tcaaagatcc aagggcccta ctaaaagcaa gagtcttcaa catcaagaga
     4621 agcagctcaa tgaaagtatt tctcacccaa acaggttgcc aactggggag ccttcacatc
     4681 ctgatggtga cgcccagctc ccagcctccc aggaatccat ggctacctct gtggacggca
     4741 gtgacaactc ctttagctct aaaagctcct ctgctgagtt tggagctgcg tttgagtatt
     4801 cagatgaaga caaggatgag gaggtcgggg tcactgcatc acaggccgca atccaggccg
     4861 cagacacaga ggaggcagtg aggcgctata tccgctctaa gcctgccctg cacaggcagg
     4921 tcctgaggta ccagcctgtg gagctggccg agctgcaggc tgagctgaaa cagaatggca
     4981 tccctgtggc catgggcaag ctgtcggaca tcctggacgc tcagtgcatc accttcacca
     5041 ctgctgcagc ccgaaaggag aaactcaaac acaagagacg gcagccctca ggccgaaaga
     5101 aaaaggatca gaaatgacag gcctccaccc agtagacctg ccagaggacc tgggcaccta
     5161 gcataagtca ggcctctgca gtatgtcgta ggatatgggc ctatgtctgt gtaaaggaca
     5221 agaactcgag cgtactttcc tgcactccag ctccgttgtc ccctttggac tcagagcaca
     5281 cccttccccc ctcagtcagt gccagttttc cccctttggc ccaaccaggg tccccatcct
     5341 gtgtgttcct gaaaggcagt gggccacacc agcgaccaga gcaagacctg agccttcttc
     5401 acttgcctct ctgtgtccag cacacccaag cacagctgcc ctatattctg ggacaggcaa
     5461 ctgggtccag ccttctcagc attgaaacca gcccagccgc catggcagac cagacaccga
     5521 cgggcggcct gcaccctgtg cttgcccaga tacttgccac tgtcaccagc atcctacaag
     5581 tagggcccag cacagctatg aagaccccca aagtaagcat gtttgtgggc tccacccatt
     5641 tgtgttaagc ctccttgacc cagtgtggac tctgggacca gaaaaaaaca gaagtttggg
     5701 ttttcacagc ctgtgagtgt ccttgtgtgt tttaaataca gtgaagttgt tttatataat
     5761 gtgcaataaa aacaaagaag actttattta aaaataaata aataaataaa ct
//
