LOCUS       NM_001136476             924 bp    mRNA    linear   ROD 19-DEC-2023
DEFINITION  Mus musculus Sycp3 like X-linked (Slx), mRNA.
ACCESSION   NM_001136476 XM_973255 XM_973298
VERSION     NM_001136476.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Moretti C, Blanco M, Ialy-Radio C, Serrentino ME, Gobe C, Friedman
            R, Battail C, Leduc M, Ward MA, Vaiman D, Tores F and Cocquet J.
  TITLE     Battle of the Sex Chromosomes: Competition between X and Y
            Chromosome-Encoded Proteins for Partner Interaction and Chromatin
            Occupancy Drives Multicopy Gene Expression and Evolution in Muroid
            Rodents
  JOURNAL   Mol Biol Evol 37 (12), 3453-3468 (2020)
   PUBMED   32658962
  REMARK    GeneRIF: Battle of the Sex Chromosomes: Competition between X and Y
            Chromosome-Encoded Proteins for Partner Interaction and Chromatin
            Occupancy Drives Multicopy Gene Expression and Evolution in Muroid
            Rodents.
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Kruger AN, Brogley MA, Huizinga JL, Kidd JM, de Rooij DG, Hu YC and
            Mueller JL.
  TITLE     A Neofunctionalized X-Linked Ampliconic Gene Family Is Essential
            for Male Fertility and Equal Sex Ratio in Mice
  JOURNAL   Curr Biol 29 (21), 3699-3706 (2019)
   PUBMED   31630956
REFERENCE   3  (bases 1 to 924)
  AUTHORS   Hasegawa K, Sin HS, Maezawa S, Broering TJ, Kartashov AV, Alavattam
            KG, Ichijima Y, Zhang F, Bacon WC, Greis KD, Andreassen PR, Barski
            A and Namekawa SH.
  TITLE     SCML2 establishes the male germline epigenome through regulation of
            histone H2A ubiquitination
  JOURNAL   Dev Cell 32 (5), 574-588 (2015)
   PUBMED   25703348
REFERENCE   4  (bases 1 to 924)
  AUTHORS   Comptour A, Moretti C, Serrentino ME, Auer J, Ialy-Radio C, Ward
            MA, Toure A, Vaiman D and Cocquet J.
  TITLE     SSTY proteins co-localize with the post-meiotic sex chromatin and
            interact with regulators of its expression
  JOURNAL   FEBS J 281 (6), 1571-1584 (2014)
   PUBMED   24456183
REFERENCE   5  (bases 1 to 924)
  AUTHORS   Cocquet J, Ellis PJ, Mahadevaiah SK, Affara NA, Vaiman D and
            Burgoyne PS.
  TITLE     A genetic basis for a postmeiotic X versus Y chromosome
            intragenomic conflict in the mouse
  JOURNAL   PLoS Genet 8 (9), e1002900 (2012)
   PUBMED   23028340
  REMARK    Erratum:[PLoS Genet. 2019 Jul 22;15(7):e1008290. PMID: 31329581]
REFERENCE   6  (bases 1 to 924)
  AUTHORS   Ferguson DA, Chiang JT, Richardson JA and Graff J.
  TITLE     eXPRESSION: an in silico tool to predict patterns of gene
            expression
  JOURNAL   Gene Expr Patterns 5 (5), 619-628 (2005)
   PUBMED   15939374
REFERENCE   7  (bases 1 to 924)
  AUTHORS   Escalier D, Eloy L and Garchon HJ.
  TITLE     Sex-specific gene expression during meiotic prophase I: Xlr (X
            linked, lymphocyte regulated), not its male homologue Xmr (Xlr
            related, meiosis regulated), is expressed in mouse oocytes
  JOURNAL   Biol Reprod 67 (5), 1646-1652 (2002)
   PUBMED   12390899
REFERENCE   8  (bases 1 to 924)
  AUTHORS   O'Carroll D, Scherthan H, Peters AH, Opravil S, Haynes AR, Laible
            G, Rea S, Schmid M, Lebersorger A, Jerratsch M, Sattler L, Mattei
            MG, Denny P, Brown SD, Schweizer D and Jenuwein T.
  TITLE     Isolation and characterization of Suv39h2, a second histone H3
            methyltransferase gene that displays testis-specific expression
  JOURNAL   Mol Cell Biol 20 (24), 9423-9433 (2000)
   PUBMED   11094092
REFERENCE   9  (bases 1 to 924)
  AUTHORS   Di Carlo AD, Travia G and De Felici M.
  TITLE     The meiotic specific synaptonemal complex protein SCP3 is expressed
            by female and male primordial germ cells of the mouse embryo
  JOURNAL   Int J Dev Biol 44 (2), 241-244 (2000)
   PUBMED   10794082
REFERENCE   10 (bases 1 to 924)
  AUTHORS   Calenda A, Allenet B, Escalier D, Bach JF and Garchon HJ.
  TITLE     The meiosis-specific Xmr gene product is homologous to the
            lymphocyte Xlr protein and is a component of the XY body
  JOURNAL   EMBO J 13 (1), 100-109 (1994)
   PUBMED   8306953
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BX322592.7 and
            CF981602.1.
            
            On or before Nov 1, 2008 this sequence version replaced
            XM_973255.1, XM_973298.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN00849384 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               BX322592.7         33032-33168         c
            138-260             BX322592.7         31456-31578         c
            261-309             BX322592.7         25801-25849         c
            310-887             CF981602.1         1-578               c
            888-924             BX322592.7         10260-10296         c
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 18.15 cM"
     gene            1..924
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /note="Sycp3 like X-linked"
                     /db_xref="GeneID:664829"
                     /db_xref="MGI:MGI:99543"
     exon            1..137
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            138..260
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..802
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /codon_start=1
                     /product="Sycp3 like X-linked"
                     /protein_id="NP_001129948.1"
                     /db_xref="CCDS:CCDS53026.1"
                     /db_xref="GeneID:664829"
                     /db_xref="MGI:MGI:99543"
                     /translation="MSIKKLWVIPKDGYLLLLDFDSDEEEEQAHSEVKRPAFGKHENM
                     PPHVEADEDIRDEQDSMLDKSGENVSFSVEWQRFARSVETPMENWNLLSGEQQVRNAS
                     ELDLMEVQNPVTHDDGNANPEVVVGDTRKKINNKLCEQKFDMDIQKFNEEQEKSVNNY
                     QKEQQALKLFECSQSQTLEAIEDMHEKSMEGLMNMETNNYDMLFDVDGEETL"
     exon            261..327
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            328..362
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            363..488
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            489..552
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            553..634
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            635..733
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
     exon            734..924
                     /gene="Slx"
                     /gene_synonym="EG664958; Xmr"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggcatctc tgctgacaat ggttttttac cattgaggag ctgagcacgg aagggtgcag
       61 ttgtgaaggt gttcacctct gagataacct gtaagtgata atcggctctg ctcagggttg
      121 ttggacagtt aatcgagaaa ataactgagc gcttaagata aaaatgtcta ttaagaaact
      181 gtgggtgata ccaaaggatg gttacttatt acttcttgac tttgattcag atgaagaaga
      241 agagcaggct cattctgaag taaagaggcc agcatttggc aaacatgaga atatgccgcc
      301 tcacgtagaa gcagatgaag atataagaga tgaacaagac agtatgttgg ataaatctgg
      361 agaaaacgta agtttctcag tggaatggca gcgttttgca cgttctgtag agacaccaat
      421 ggaaaactgg aatttgttaa gtggtgaaca gcaagttagg aatgcttctg aattggacct
      481 tatggaagta cagaatccag taactcatga tgatgggaat gcaaatcctg aagtagtagt
      541 tggagataca cgaaagaaga tcaacaacaa attgtgtgag cagaagtttg atatggatat
      601 acagaaattc aatgaagaac aagaaaaatc agtgaacaat tatcaaaaag aacaacaagc
      661 attaaaactg ttcgaatgta gtcagagtca gaccctggaa gcaattgaag acatgcatga
      721 gaagtccatg gagggtttga tgaacatgga gaccaacaac tacgatatgc tttttgatgt
      781 tgatggtgaa gagacattat gaagcatact ctgaagtact cttctccttt cccatcttca
      841 gactaatgaa gcattcatat ttctcacttg ctggtacatt tgtaaccaaa taaaaaattc
      901 actaacattt ttgtctccta tgaa
//
