LOCUS       NM_001357851            4443 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus SLIT and NTRK-like family, member 3 (Slitrk3),
            transcript variant 2, mRNA.
ACCESSION   NM_001357851 XM_006501642
VERSION     NM_001357851.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Matsumoto,Y., Miwa,H., Katayama,K.I., Watanabe,A., Yamada,K.,
            Ito,T., Nakagawa,S. and Aruga,J.
  TITLE     Slitrk4 is required for the development of inhibitory neurons in
            the fear memory circuit of the lateral amygdala
  JOURNAL   Front Mol Neurosci 17, 1386924 (2024)
   PUBMED   38736483
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4443)
  AUTHORS   Koo,H.Y., Kim,M.A., Min,H., Hwang,J.Y., Prajapati-DiNubila,M.,
            Kim,K.S., Matzuk,M.M., Park,J.W., Doetzlhofer,A., Kim,U.K. and
            Bok,J.
  TITLE     Follistatin regulates the specification of the apical cochlea
            responsible for low-frequency hearing in mammals
  JOURNAL   Proc Natl Acad Sci U S A 120 (1), e2213099120 (2023)
   PUBMED   36577057
REFERENCE   3  (bases 1 to 4443)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4443)
  AUTHORS   Memic,F., Knoflach,V., Morarach,K., Sadler,R., Laranjeira,C.,
            Hjerling-Leffler,J., Sundstrom,E., Pachnis,V. and Marklund,U.
  TITLE     Transcription and Signaling Regulators in Developing Neuronal
            Subtypes of Mouse and Human Enteric Nervous System
  JOURNAL   Gastroenterology 154 (3), 624-636 (2018)
   PUBMED   29031500
REFERENCE   5  (bases 1 to 4443)
  AUTHORS   Li,J., Han,W., Pelkey,K.A., Duan,J., Mao,X., Wang,Y.X., Craig,M.T.,
            Dong,L., Petralia,R.S., McBain,C.J. and Lu,W.
  TITLE     Molecular Dissection of Neuroligin 2 and Slitrk3 Reveals an
            Essential Framework for GABAergic Synapse Development
  JOURNAL   Neuron 96 (4), 808-826 (2017)
   PUBMED   29107521
  REMARK    GeneRIF: findings reveal how unique postsynaptic Cell Adhesion
            Molecules neuroligin 2 and slitrk3 work in concert to control
            synaptogenesis and establish a general framework for GABAergic
            synapse development.
REFERENCE   6  (bases 1 to 4443)
  AUTHORS   Oeschger,F.M., Wang,W.Z., Lee,S., Garcia-Moreno,F., Goffinet,A.M.,
            Arbones,M.L., Rakic,S. and Molnar,Z.
  TITLE     Gene expression analysis of the embryonic subplate
  JOURNAL   Cereb Cortex 22 (6), 1343-1359 (2012)
   PUBMED   21862448
REFERENCE   7  (bases 1 to 4443)
  AUTHORS   Beaubien,F. and Cloutier,J.F.
  TITLE     Differential expression of Slitrk family members in the mouse
            nervous system
  JOURNAL   Dev Dyn 238 (12), 3285-3296 (2009)
   PUBMED   19924824
REFERENCE   8  (bases 1 to 4443)
  AUTHORS   Yoshida,Y., Han,B., Mendelsohn,M. and Jessell,T.M.
  TITLE     PlexinA1 signaling directs the segregation of proprioceptive
            sensory axons in the developing spinal cord
  JOURNAL   Neuron 52 (5), 775-788 (2006)
   PUBMED   17145500
REFERENCE   9  (bases 1 to 4443)
  AUTHORS   Aruga,J., Yokota,N. and Mikoshiba,K.
  TITLE     Human SLITRK family genes: genomic organization and expression
            profiling in normal brain and brain tumor tissue
  JOURNAL   Gene 315, 87-94 (2003)
   PUBMED   14557068
REFERENCE   10 (bases 1 to 4443)
  AUTHORS   Aruga,J. and Mikoshiba,K.
  TITLE     Identification and characterization of Slitrk, a novel neuronal
            transmembrane protein family controlling neurite outgrowth
  JOURNAL   Mol Cell Neurosci 24 (1), 117-129 (2003)
   PUBMED   14550773
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102396.29 and AK139438.1.
            
            On Nov 10, 2017 this sequence version replaced XM_006501642.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158856.1, SRR1660811.204959.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                AC102396.29        56753-56831
            80-1453             AK139438.1         2-1375
            1454-4443           AC102396.29        64298-67287
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 32.59 cM"
     gene            1..4443
                     /gene="Slitrk3"
                     /gene_synonym="ST3"
                     /note="SLIT and NTRK-like family, member 3"
                     /db_xref="GeneID:386750"
                     /db_xref="MGI:MGI:2679447"
     exon            1..256
                     /gene="Slitrk3"
                     /gene_synonym="ST3"
                     /inference="alignment:Splign:2.1.0"
     exon            257..4443
                     /gene="Slitrk3"
                     /gene_synonym="ST3"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..3217
                     /gene="Slitrk3"
                     /gene_synonym="ST3"
                     /note="slit and trk like gene 3; SLIT and NTRK-like
                     protein 3"
                     /codon_start=1
                     /product="SLIT and NTRK-like protein 3 precursor"
                     /protein_id="NP_001344780.1"
                     /db_xref="CCDS:CCDS17410.1"
                     /db_xref="GeneID:386750"
                     /db_xref="MGI:MGI:2679447"
                     /translation="MMKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEP
                     CFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRRLYTNSFLHLN
                     NAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYN
                     VIKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLKVLFYRGML
                     DHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREI
                     KKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQP
                     KPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVN
                     CKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQD
                     GAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLK
                     LLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWD
                     CTCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPS
                     PPQPGDYHPNGGPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRR
                     RRKKLPFRSKRQEGVDLTGIQMQCHRLFEDSGGNSGGSGGGGRPTLSSPEKAPPVGHV
                     YEYIPHPVTQMCNNPIYKPREEEEVAASAAQDTGATDRGGPGTQPTGMAEVLLGSEQF
                     AETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPHPHHSAVGGVSGVGGGT
                     GGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLDRERPQPAPCTVGFVDCLYGTVPKLK
                     ELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEV
                     LEKTAYRF"
ORIGIN      
        1 ggatttgcct gcgatgcgcg gcgagaggac tgcggcggct gatttacaca gttggcgcgg
       61 aggaggggcc gggggtgcgg ggggacaagc tggcggaggc tccagcgatg ggctgatctg
      121 ggggctccgg agcgccgctc cctcggtgcg cgatttgggg gcggctggtg gctttgcatt
      181 cgggttccag ccctgcgttt tctgtattgc cttctagtcc ctgacctggc gctcccagtt
      241 tagaggcaga cgttcgtttt gtaatcaacc aggaatgatg aagccaagca tagctgaaat
      301 gcttcacaga ggaagaatgc tgtggataat tcttctaagc acaattgctc taggatggac
      361 taccccaatt cccctgatag aggactcaga agaaatagat gagccctgtt ttgatccatg
      421 ctactgcgaa gttaaagaaa gcctctttca catacattgt gacagcaagg gatttacaaa
      481 cattagtcag attactgagt tctggtcaag accttttaaa ctgtatcttc agaggaattc
      541 gatgagaaga ctatacacaa acagttttct tcacttgaat aatgcggtgt ccattaacct
      601 tgggaacaat gcattgcagg acattcaaac tggagcattt aatggcctta agattttaaa
      661 gagactgtat ctccatgaga acaaactaga tgtcttcaga aatgacacct tccttggctt
      721 agaaagtctg gaatatcttc aggcagatta caatgtcatt aaacgtatag agagtggggc
      781 atttcggaac ctaagtaaat tgagggttct aatcttaaat gataatctca tccccgtgct
      841 tccaaccaat ttatttaaag ctgtttcctt aacgcatctg gaccttcgtg ggaacaggtt
      901 aaaggttctc ttctaccgtg ggatgctgga tcacattggc agaagcctga tggagctcca
      961 gctagaagag aatccttgga actgtacctg tgagatagta cagctgaaga gttggctgga
     1021 gcgaatacct tacacagccc tggtgggaga cattacctgt gagacacctt tccatttcca
     1081 tgggaaggat ctccgtgaaa tcaagaagac tgaactctgt ccactgttgt ctgactctga
     1141 ggtggaggcc agtctgggga ttccccactt atcttcaagc aaggagaatg cctggccaac
     1201 taaaccttcc tctatgttgt cttctgtcca ttttactgct tcatctgttg aatataagtc
     1261 ctctaataag caaccaaaac ccaccaaaca gcccagaaca ccgagaccac cttcgacatc
     1321 ccaggcttta tatcctggtc caaatcaacc tcctattgcc ccctatcaga ctagaccacc
     1381 cattcccatt atatgtccta ctgggtgtac atgcaatttg catatcaatg accttggctt
     1441 gactgtcaac tgcaaagaaa gaggatttaa caacatctct gaactccttc caaggccctt
     1501 gaatgccaag aagctgtacc tgagcagcaa tcttattcag aagatatacc gctctgattt
     1561 ttggaatttt tcttctttgg atctcttgca cctagggaac aatcgcattt cctacgtcca
     1621 ggatggggct ttcatcaacc tgcccaacct gaagagtctc tttctcaatg gcaatgatat
     1681 agaaaagctg actccaggta tgttccgagg tctgcagagc ttgcattact tgtacttcga
     1741 attcaacgtc atccgggaaa tccaacctgc agccttcagc ctcatgccca acttgaagct
     1801 gctatttctc aacaataact tgctgaggac tctgccaact gatgcctttg caggtacatc
     1861 cctggctcgg ctcaacttga ggaagaacta ctttctctac ctgccagtgg ctggtgtcct
     1921 tgaacacctg aatgccattg tgcagataga tctcaacgag aatccttggg actgcacttg
     1981 cgacttagtc ccctttaagc agtggatcga aaccatcagc tcagtcagcg tggtaggtga
     2041 tgtactctgt aggacccccg agaacctcac ccaccgtgat gtgcgcacta ttgagctgga
     2101 agttttatgc ccagagatgc tgcatattgc ccaacctgga ccatctccac cccagcctgg
     2161 agattaccac cctaacgggg gaccaacaag tgcatcacct tatgagttct ctcccccagg
     2221 gggccctgtg ccactttctg tgttgattct cagcctcttg gttctgttct tctcagctgt
     2281 ctttgttgct gcaggcctct ttgcctatgt gctccgtcgg cgtaggaaga agttgccctt
     2341 tagaagcaag agacaagaag gtgtggacct tacaggaatc cagatgcaat gtcaccggct
     2401 gtttgaggac agtggaggca acagtggtgg gagtggaggt ggagggcgac caactctgtc
     2461 ctcgccagag aaagcccctc ccgtgggtca cgtgtacgag tatatacccc acccagtaac
     2521 tcagatgtgt aacaacccca tctataagcc tcgagaggag gaagaagtgg ctgcctcagc
     2581 agcccaggac acaggagcta cagaccgtgg aggtcctggt acacaaccaa caggaatggc
     2641 tgaggtgctc ttgggaagtg agcagtttgc agaaacaccc aaggagaacc acagtaacta
     2701 caggaccttg ctggaaaaag agaaggagtg ggctctggct gtttccaact ctcaacttaa
     2761 caccatagtg acggtgaacc atcaccaccc tcaccctcac cactcggcag ttggtggggt
     2821 ttcaggggta ggtggaggga ctgggggaga cttggctggg ttccgccacc atgagaagaa
     2881 tggtggggtg gtgctgtttc cccctggggg aggttgtggt ggtggcagtc tgctactaga
     2941 ccgtgagagg ccacagcctg ctccgtgcac agtgggattt gtggactgtc tctatggcac
     3001 agtgcccaaa ttaaaggaac tccatgtcca cccccctggc atgcaatatc cagacttaca
     3061 gcaggatgcc aggctcaaag aaacccttct cttctcagct ggaaagggct tcacagacca
     3121 ccaaaccccc aaaagtgatt acctcgactt aagggccaaa cttcaaacta agccggatta
     3181 cctcgaagtt ctggagaaaa cagcatacag gttctaaccg aaagaagaaa ataaattagt
     3241 ggctttgttt tgatttccaa aagaaaaagg aaaataaaaa gaaatatatc cccggctccc
     3301 attatacttg tcccaataac tacatcctta cagtttcccc tgcctaggac agaactgaaa
     3361 cgcatgataa ctagagaata caaaagtgtg ctccccctct cagatgtgat tttgaggaag
     3421 ggccatactc agatcattaa tcaatgaagt gccttcgcag acttttgcca gcaaatgtta
     3481 tcattatttt ttatactgaa actcgagact ttgactgtgc catgtgtgag gtatactggg
     3541 gatcgttgta ttgatcctaa atgagtaaac ttcaatgtgt ctttttattt tcagtaactt
     3601 ttcttccctt tagttgcagt tatgtttgaa agggaggggg gaggttggca tttatggctt
     3661 tctctccttt tcccatcatg gcacagattc tgtacatgta ttaacaatgc agtttgctgc
     3721 atgcttgaaa actgcaggat ggggagggag gggcgggtct tgctcgaatg ttctcacact
     3781 gttgtctcac acacatattc atgtgcacac agcaactccc tacatacact taggtccctc
     3841 agcctgcact gggtgcagta cacacacaca cgcacacgca cacacacacg cacacacacg
     3901 cgtacacacg cgcgcgcgcg cgcgcacaca cacacacaca cacacctccc ctgcaactta
     3961 atacgcttag ttcgggtttg atctatttct tcctctacat agctccacgt gcccttcact
     4021 cctagtgtac agctcacggc atctctccta ccaccctggg aaaagtcaca ttcgaggctg
     4081 gatcctactg aagtcaaggc ttgttcgttt aacagctgga gacacaccta gggttgagcc
     4141 accctcctcg tgacatttca tcttgatgtc aagatttttg agaacatctg cactttctta
     4201 tacatatata tataaatata aatatatgat attaaaaaat aaaaaagcaa ctgggtatat
     4261 atcactaaca gctttgtagg aagcactttt aatgttttct ctctcacaca caaagattca
     4321 aaggaaatgt gcatatattt attctgtaat ttcagtgatt ataaattgta aaggtaatgt
     4381 ttaatcattg tatagtgatt atgcgtctgg tatagctttc ctaataaaaa gtttttgaaa
     4441 aac
//
