LOCUS       NM_177570               1744 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus schlafen like 1 (Slfnl1), transcript variant 1, mRNA.
ACCESSION   NM_177570
VERSION     NM_177570.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Park,S., Shimada,K., Fujihara,Y., Xu,Z., Shimada,K., Larasati,T.,
            Pratiwi,P., Matzuk,R.M., Devlin,D.J., Yu,Z., Garcia,T.X.,
            Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched
            genes are dispensable for male fecundity
  JOURNAL   Biol Reprod 103 (2), 195-204 (2020)
   PUBMED   32561905
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Ferguson,D.A., Chiang,J.T., Richardson,J.A. and Graff,J.
  TITLE     eXPRESSION: an in silico tool to predict patterns of gene
            expression
  JOURNAL   Gene Expr Patterns 5 (5), 619-628 (2005)
   PUBMED   15939374
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL611924.14.
            
            On Mar 30, 2023 this sequence version replaced NM_177570.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK077106.1, SRR5189670.148690.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-234               AL611924.14        112276-112509
            235-805             AL611924.14        113045-113615
            806-1336            AL611924.14        114972-115502
            1337-1480           AL611924.14        115706-115849
            1481-1744           AL611924.14        116425-116688
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 56.52 cM"
     gene            1..1744
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /note="schlafen like 1"
                     /db_xref="GeneID:194219"
                     /db_xref="MGI:MGI:3045330"
     exon            1..234
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            235..805
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             371..1603
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     schlafen-like protein 1"
                     /codon_start=1
                     /product="schlafen-like protein 1 isoform 1"
                     /protein_id="NP_808238.1"
                     /db_xref="CCDS:CCDS18590.1"
                     /db_xref="GeneID:194219"
                     /db_xref="MGI:MGI:3045330"
                     /translation="MSLRKRSAQTQMWESPVMSQGKQSLLELPLKESPPKDSGLKAVP
                     STHTLYVSHLNPQFSVPVLACLLRDTLERLELPVARGQIEVVRRPRNTYALVQVAAPK
                     AVLASLPWRLQMALEEQLILKELTARGKELVLSEALESLHHREQEDSGPSPSHSPGPS
                     PGPSPGLRHPPLPQLADPSPIWGSAGRRQISQNRPSGVRSDSAIVHHKILGQEQLFQG
                     AFLGSETRNMEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIHC
                     SHRDEDRTRLLVDSILQGFKPQVFPDAYTLTFIPVISTTTTSTPLKVLRLTVHTPKAQ
                     GEPQLYETDQGEVFLRRDGSIQGPLSVGAIQDWCRQKWAMELGKLEEKVKVLTLEKEQ
                     LQQQLRQRQPLSCSCCVL"
     exon            806..1336
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1480
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1481..1744
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1723..1728
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1744
                     /gene="Slfnl1"
                     /gene_synonym="4933406A14Rik"
                     /note="major polyA site"
ORIGIN      
        1 aagtgtcctg gttcaaggag ttgtgggagc tcggggctga caccgcctat gcccctggag
       61 gagccagcag gacatgaaga tcataggcct cctctttcct cctcttcctg ctagccctga
      121 atatccccac tgcagctgtg gtggctcttg gactctgact acctcaagga cccaatctag
      181 aaagatgcag gctggtggtg cctgccaccc aagttggagg ctgggggtgt ggggcctctg
      241 cccatctaca agcctccaga agcctcagca cctgtgagtc cattgggaag ccctggccag
      301 tctgagagct aggcccagga ggagcaatcg gcagtgagga ctaccaaaat tccttctgaa
      361 gaagaccacc atgagcctca gaaagagatc agcgcagaca cagatgtggg agtctcctgt
      421 gatgtcccag gggaaacagt ccctcctaga gttaccccta aaagagtccc cacccaagga
      481 ctctggcctc aaggcggttc ccagcacaca tactctttac gtgagccacc taaaccctca
      541 gttctctgtg cccgtgcttg cctgcttact gcgagacacc ctagagcggc tggagctgcc
      601 agtggcccgt ggccaaattg aggtagtgag gcggccacgg aacacttatg cactggtaca
      661 ggtggctgct cccaaggcag tgctggcctc cctcccctgg cgcctgcaga tggccttgga
      721 ggagcaacta atcctcaaag agctcacagc ccggggcaag gagctggtgt tgagtgaggc
      781 cttggagtcc ttacaccaca gggagcagga ggacagtggt ccaagcccaa gccacagccc
      841 tggaccaagc cctggcccca gcccaggcct caggcaccca ccactgcccc aactggcaga
      901 cccttcccct atctggggct cggctggccg tcggcagatc tctcagaacc gacccagtgg
      961 cgtgcgctct gacagtgcca ttgtgcacca taagatcctg ggccaggagc agctattcca
     1021 gggtgccttc cttggcagcg agacacggaa catggagttt aagcgaggca gcggtgagta
     1081 cctgagcctg gctttcaagc accatgtgcg gcgctacgta tgtgcctttc tcaacagtga
     1141 gggtggcagt ctgctggtag gtgtcgagga cagtggcctg gtgcagggca tccactgcag
     1201 ccatcgtgat gaggaccgta cacgcctgct ggtagactcc atcctgcagg gcttcaaacc
     1261 ccaggtcttt cccgatgcct acaccctcac cttcatccct gtcataagca caaccacgac
     1321 cagcacacct ctcaaggtac tccgcctgac ggtgcacact cccaaggctc agggtgagcc
     1381 acagctgtac gagactgacc agggggaggt atttctaagg cgcgatggga gcatccaggg
     1441 cccactgtcg gttggcgcca tccaggactg gtgcaggcag aagtgggcga tggagctggg
     1501 caagctggaa gagaaggtga aggtgttaac gctggaaaag gagcagcttc agcagcagct
     1561 gaggcagcgc cagccactgt cctgcagctg ctgtgtcctg tgaggacata agatgtgggc
     1621 taagacttgg agtaaaacct acctgggcca cctcctctcc cttggcattg cacacacagg
     1681 agccacagga cttcacctca gtgtgggcac agtaacataa ctaataaaca actcttggca
     1741 catc
//
