LOCUS       NM_001081225            6835 bp    mRNA    linear   ROD 18-FEB-2024
DEFINITION  Mus musculus SMC5-SMC6 complex localization factor 2 (Slf2),
            transcript variant 1, mRNA.
ACCESSION   NM_001081225 XM_484809
VERSION     NM_001081225.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6835)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC131105.4 and AC132957.3.
            
            On Apr 25, 2022 this sequence version replaced NM_001081225.2.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC150999.1, SRR10223970.20714.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-288               AC131105.4         16883-17170         c
            289-332             AC131105.4         14178-14221         c
            333-1066            AC131105.4         12667-13400         c
            1067-1121           AC131105.4         9914-9968           c
            1122-2089           AC131105.4         5907-6874           c
            2090-2160           AC131105.4         4814-4884           c
            2161-2283           AC131105.4         281-403             c
            2284-2451           AC132957.3         56245-56412
            2452-2554           AC132957.3         59342-59444
            2555-2630           AC132957.3         66278-66353
            2631-2772           AC132957.3         68007-68148
            2773-2875           AC132957.3         74240-74342
            2876-3052           AC132957.3         74776-74952
            3053-3150           AC132957.3         76310-76407
            3151-3238           AC132957.3         78871-78958
            3239-3370           AC132957.3         80407-80538
            3371-3448           AC132957.3         80881-80958
            3449-3535           AC132957.3         82902-82988
            3536-3604           AC132957.3         86434-86502
            3605-6835           AC132957.3         87829-91059
FEATURES             Location/Qualifiers
     source          1..6835
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 38.16 cM"
     gene            1..6835
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /note="SMC5-SMC6 complex localization factor 2"
                     /db_xref="GeneID:226151"
                     /db_xref="MGI:MGI:1924968"
     exon            1..288
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            289..332
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            333..1066
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1121
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..2089
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2090..2160
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2161..2283
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2284..2451
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2452..2554
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2555..2630
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2631..2772
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2773..2875
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            2876..3052
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3053..3150
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3151..3238
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3239..3370
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3371..3448
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3449..3535
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3536..3604
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
     exon            3605..6835
                     /gene="Slf2"
                     /gene_synonym="3632432H19; Fam178a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acttccgaag agagaaccgc catgaagaga gtagggggtg ccgcccacct ctgcaccgac
       61 agcctccccg agtcccagca gcaagacggc aaccacgcac ccagcttctc cagccacagc
      121 tcatgccgcc gtcgccagcg gcgccgacat gacaaggcgc tgcatgcccg ctaggccagg
      181 tttcccctca tccccagccc cggggtcgtc gcccccgcgc tgccatctga gacccggtag
      241 taccgcccct gctgcagcgg gaaaaagaac agagagtcct ggggacagga aacagtcaat
      301 catagatttc ttcaagccag ctgcaaaaca agacaaacat atgttggatt cgcctcaaaa
      361 atcaaacatc aaatacagag gaaatggatt atccatcact gggacagagc aatttgaaag
      421 gaaattatct tcaccaaaaa aacttaaacc taagaggatg tcatcagaag aaagtcctat
      481 tttagaggct ttcatgaaag gtgggaagga gcaccacaaa gatcgtggtg tccatgagtc
      541 acggcggcct tgtatgtctc taagcaaata tttacccaaa ggagctggca tctatgctcc
      601 ttcctcttat cgattgccca aagagatcaa ggcacagaag aaaaaacacc agtctcctga
      661 gagaaggaag tcactgttca ttcatgaaag taacagggag aagaatgaca gagatcgagg
      721 caagaacagt gaagactcca gaaaacaggc cacagccaca gaaggtgaca tcttcaagca
      781 tagctccaga agtattagta gcagaagcag cctgtccagg caccatccag gagaaagcac
      841 actgggggct aggttccagc tgtcattagc ttcttactgc cgagagcgag aacagaagaa
      901 gttgagaaag gaacaaatgg agcagagaat caactcggaa aattctttct cagaagcaag
      961 caacctttcc ttaaagtcgt ctggtgtagg gaaaaactgt aagccgaggc atgagcatag
     1021 caagcacact gaggctgtac ctgggaagag taatctctca actctggaaa atggacatct
     1081 ctcaagaaaa agatcatctt cagactcgtg ggaactttca ggctctaaac agaataaatt
     1141 ctccgacaaa agaaagagga actctgtgga ctcagacctg aaaagcacaa aagaacctat
     1201 cataccaaaa gcaagagagt cctttctaga gaagcgccca gacacatccc atcagagaga
     1261 aaagtttatc agacacattg cactgaagac tcctggtggt gttctgcgct tggaagacat
     1321 agccaaggag cctgaggacg agacagatcg ctcttctgca gactcggcac cttcaaatgc
     1381 tggccaccat tcttccagga atagtgacca agtccactca gcaagtacca aagagactaa
     1441 aatacagaaa ccccacttac ctttacctca ggaaaaatct acaattaaaa gagctagcaa
     1501 ccttcagaaa aacaaaccgg ctggctctgt gacatcaaaa gagacaaagc tacctttact
     1561 ttcccatgtt ccaagtgctg tttcctctcg agtaccacta aatgctaaaa attgcactct
     1621 tccagttcct aaaaaagata aagagcgttc ctcctcaaaa gaacgttctg ggcattctac
     1681 agaatcctcc aaacacaagg aacacagagc aaagactatt aaggctgttt ctaatgaatc
     1741 gtcagggaaa aattctgggg gatctttgca ttcagagtat gcccctccaa cagcatctcc
     1801 cccagctgcc ttggaagtcg tgccgagtgt cccaagccct gcagcacctt cagataaaga
     1861 gagttcagga aattccaatg caggtagcaa tgcactgaaa aggaaattca ggggtgattt
     1921 tgatagtgat gaagaaagtt taggttacac cttagagagt gatgaggaag aggaaacact
     1981 aaaatcactg gaagaaataa tggctctgaa cttcagtcgg actcctacaa cttcaggaaa
     2041 gcctcctgcg gtttccaagg ggcttagatc ccagtcgtca gactacatgg aatatgctca
     2101 gagcggaact tacacaaata ccttagagcg actagtaaag gagatggaag acacgcagag
     2161 gctagatgaa ctacagaaga agctacagga agacataaga caaggccgtg gcattaaatc
     2221 tcctctcaga actggcgatc aggatagtac agatgatggt gatggcctct tggaagaaca
     2281 cagggaattt ctaaagaaat tttcagttac agttgatgct attcctgatc atcatccagg
     2341 tgaagaaata tttaatttcc tcaattctgg aaaaattttc aatcagtata ccttagattt
     2401 aagagactct ggttttattg gagaaagtgc tgtggaaaag cttattctca aatcaggaaa
     2461 aacagatcag atttttttga caacacaagg cttccttacc actgcatatc actacgtcca
     2521 atgtcctgta cctgtgttaa agtggctgtt tcggatgatg tcggttcaca cagattgtat
     2581 tgtgtcggtg cagattttaa gtacattgat ggaaataacc attagaaatg atactttcag
     2641 tgactctcca gtttggccct ggatcccatc tttgtctgat atagcagctg tattcttcaa
     2701 catgggcgtt ggttttggat ctttgtttcc tctggagact cttcagcctg actttaatga
     2761 agaaaatcta atttctgaaa cacagaaaac actgggggga aaagaaagtg aagattcacc
     2821 ttatagtcca gtattttcag ctcttcctga aaccaacatt ttaaatgtgg ttaagttcct
     2881 aggtctgtgc acatctatac atccagaagg ttaccaagat ggagaattaa tgctgctgat
     2941 tttaatgctg tttaaaatga gtttggaaaa agagcttaaa cagattccat tagtagactt
     3001 tcagagcctc ctgataaatc tcatgaaaaa catcagagat tggaacacaa aggttcatga
     3061 actctgtctg ggcataaatg aactctccag tcatccccat aaccttcttt ggttggtaca
     3121 gctagtccct aactggacat ctcgtggaag gcagctgagg cagtgcctca gtctggtgat
     3181 gatgtcaaag cttttggatg aaaagcatga agatattcct aatgccaata accttcagat
     3241 ctcggtcctg catcgatatc ttgtgcagat gaagccttct gatttgttga agaaaatggt
     3301 cttgaagaaa agggccgaac agccaaatga aactattgat gacagtcttc atttagaact
     3361 tgaaaagcag gcatattacc tgacctacat ccttcttcat ttagttgggg aagttagttg
     3421 ctctcattct ctttcttctg gacaacggaa acacttcgtg ctgctttgtg gggctttgga
     3481 aaagcatgtt aagtgtgata ttagggaaga tgcaagactt ttctacagaa ctaaagtgaa
     3541 agacttggtt gccagaatac atggaaaatg gcaggaaata attcagaact gtcggcctac
     3601 tcaggggcag cttcatgact tctgggtgcc agattcttaa cagaagttag agcagcagaa
     3661 atacaaacaa gggcctctcc gagaggatta ctgtgggatg cagagatgct gaggggcacg
     3721 gctgtgtgct gctcgcatgc gtggtgtgag gctgctggtg aagactttcc catttctgaa
     3781 gcagagatga agatatgcca tctgcagccg atgctagagg gaagaccagg ggccgaggaa
     3841 agaaggcgag ggaagctgct ggtagctaca gatccaggct gcccctcccc tccttgctac
     3901 gttttcagca gttaccttgt aaggtggctt cataacactt ggatcatcac agaaaagaag
     3961 aagaaaagtg tggaccagct tgagttggac attgaaatga aggcctaagt ccagctggtt
     4021 ttcagttccc ttctggttat tttagggtac aaagggaagg cttagaatag agccctgtaa
     4081 ttagaagtgt tggtctcttc tataacccat aaaccatagg cagtttcagc ccatatatat
     4141 cccttagtat tcaaaattat aaatctgaga tttttaaata tatttaaaat caaggaatag
     4201 acatctggta tgttgtcaga ctgcccttag aggaagagat taagctataa aatagtgact
     4261 gtttttaaaa tgccagaaca ttcataggca gtttgtttag ggtttcttgt aatgcatata
     4321 tttttaaata ctgatttaat cataaaatct cagctaagct agaattctgg ccattggtaa
     4381 ctctattaca gaagtctgtg taaaaaggct tcaaaatctg gaagtttcca aaatccttgt
     4441 ttccacaagt atcatttagc agaggccttg atggtgttta ttttggggac atgcatgtga
     4501 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcacgc
     4561 gcgcgttcgc gcacatgtac acgcacactc aagtttgtat cttgaagttg ttgcacttga
     4621 aaaccacagc tgctctaaat tcttttaaac actggaaagc catcctttag tttagatggt
     4681 cgagggttag cagaggtgca catgctagat tgagccttag gccctttgaa aactttggta
     4741 gtgacactcc tgttgacagg tgtcagtttg gggaggtttg cttcctaaaa aggatgccaa
     4801 ctgcttattc tttgactatt ggctggagca agtggcttgc tccctcttga gcatgctaat
     4861 gtgtgtgtgg gtccaggtca ggtggtggaa aagggaactg ggctcagtgt taaggtttga
     4921 gaggagaaaa taagttctga gagctaactc tttctacctc taaactgagg cttaggaata
     4981 aaaaccattg tatcttaaat tcatcattta aattagcatt agcgacttta tagctcctgt
     5041 caagcattgg gcagttagag attttataga gaagactaca caaatcacat tttcaagaat
     5101 tgaggctgat cgaggctcca agagtcagac caacaagttt tattctgtgt tgagtttact
     5161 ggtaagaata ttgtcttgat gctacctctc aagggtattg ttacaaatgc cactatggtt
     5221 aaagagatag atacgaagag ctatatttga ctgaagcttg aaactctggc atctatctgc
     5281 ccaacggtgg ggctctcact ctgtaattta atccttgtag atacattgtt tgtgtgtaat
     5341 tttataagtg ttcatatttt tctcattttg cattgtgtaa agtgtacaaa atctcaaagt
     5401 ataaaaatct gcttatattg cttgtaatta cagtgtgtaa atattttcta ttgtgtacat
     5461 tgacggggac aagtgggtta ttcaggtttt taagtgatcc ttttatattg cagtttcaac
     5521 caataaccac ccatcaaatt taaaaccact ttgatacatt cttatttagc aggtcctata
     5581 agaataaaat ctctattttc aattgtcttt ctccactaga gaaaaatact ttatctgtcc
     5641 ctttaaaata aatggccaga catcagtttc ggcctctgaa tttatgactc tggtagcagc
     5701 cttcagtctc cgggtcagag tccagtcagt atttacattt gggttcttgt ggaaatgttg
     5761 tggttctatt ttagcacaag tagctcatgg tttttaatcc caaatcaagt attttccatc
     5821 ttctgagtcc ctgtgcgttg tctccctctg tctgttgttg cccagaaagt gggatggtag
     5881 cgagggagga agtgctcgct gcacagagac tgtcaggcca tacttgggac tgggcaaacg
     5941 agcttgcact gagcggtggt gtgtttggca atattactgt gccaaaaata atccttgtct
     6001 cattttctgg atgtgtgatg tcaaactttt tacccttact gcaagctgaa cattaaagta
     6061 cttgtgttta tgcttttgtg tgtaactgtt tgcctttcct gacctgcttt tcttgttacc
     6121 tgaaagtaca gttctgtaac acatgtcaag tgaaaaggtt ttccatgctc aagatcacct
     6181 gtgtagctct gcagtcagtg ttgtgcattg ttttgtctct gtcctgatgg caacggtgcc
     6241 tttgtcacct ttcagaaggt tggctttttt ttttttttaa tgcaagtaat agcttgcttc
     6301 gacttcacaa aaaaaaaaaa aaaaagaaaa gtgaaatata tatatatatc cccagtaatg
     6361 atagataagt taccacccag gctctgtttt ttgtttgttt ggctttttgt tttgttttgt
     6421 tttcttcccc tttcccccca atcagaacag acacagttgg tggggacagt aatgtgtgga
     6481 gtcttgaaac caggagtgtt tttccattta caaactgact catcgccaag cggctgggtt
     6541 ggagaacttt cttggcttgt ctctcaggag gcaagggtct gctacaggtg gtgggggcgt
     6601 gagtcagcac aatcccatct cgtggctatg cctactctat ggtgcaggcg cacctcatct
     6661 gtgcctcagt ttccccgggg cattcttgtc agccagttaa tctactagct cttaggcagt
     6721 aaatgcaatg tgttgtggtt tggttttttt ttttccttta aaattttata ctgtcttgtt
     6781 taaagtcttc tgaatgtatg tgtatgtgtt attaaaactt ttttctcagc ttaaa
//
