LOCUS       NM_027584               2328 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier organic anion transporter family,
            member 6d1 (Slco6d1), transcript variant 1, mRNA.
ACCESSION   NM_027584 XM_129964 XM_910370
VERSION     NM_027584.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK014872.1.
            
            On or before Aug 16, 2009 this sequence version replaced
            XM_910370.2, XM_129964.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK014872.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2328              AK014872.1         2-2329
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 47.76 cM"
     gene            1..2328
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /note="solute carrier organic anion transporter family,
                     member 6d1"
                     /db_xref="GeneID:70866"
                     /db_xref="MGI:MGI:1918116"
     exon            1..374
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..2134
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="solute carrier organic anion transporter family,
                     member 6d1 isoform 1"
                     /protein_id="NP_081860.1"
                     /db_xref="CCDS:CCDS48332.1"
                     /db_xref="GeneID:70866"
                     /db_xref="MGI:MGI:1918116"
                     /translation="MAQDKIKQKDAVKQAQVVDMDEHQKTKEPRKLEMFLVTLPTAVK
                     KFADTPDMKKSDRKYKDPSEEPYGLGSLVFPCLQRFNNVKSFLTLSFLAVVAHSMIFA
                     LVDQSIKLYVAQLSPSRIEEYLMDTSDNFVAFLFSMFVAHFGGRGNRANWVAAGCFLT
                     GIAAIVFAVPFLNFEIIKLSVVKEELCEEGKLPKVCEPTVLPHKSICIFIFIFGQCLH
                     GIAGLPLYILATSFIFDHVPTNSSGLYIALVDAALGVGYCLGFIGGMLNFKMSAQEVM
                     QAVGHRQRIRILQRGWWRTFIFVAVFAFCTTLPLLGFPSSLPGARQIRLEKSQEPPTF
                     DRRLKNKEIKNNLKSVLHATWCLIRNPLVLSQVVCKFTEFTTFKSSAVFLPQYLQTRF
                     LIRPSSASMLTGVFILPGSIFGHFFGGFIVHRMQMNNKNKLKFLVVASFVSIVLFLLT
                     FFVECEISKFAGINDDYDRLGIIGNLTAPCNVPCGCTTSEYNPVCGRDETQYFSPCFA
                     GCKATKKLRKEKTYYNCSCIKEGLTTADNEGQYIDAVSGTCNTRCLTLPLFFAFYFTA
                     TFLSSFCSIPSALIVIQSVPTSWNSMSLGLMSTVWRFTGSVPAPILFAATSDFTCQFW
                     GINECGEKVRCWIYNTENLVYTFKTVWINMQILSGLSCLYGVYRHDYVVKGDGKKAEE
                     K"
     exon            375..635
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            636..821
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            822..918
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1037
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1147
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1292
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1488
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1642
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..1830
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1831..1895
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1896..2033
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2034..2166
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2167..2328
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2302..2307
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slco6d1"
                     /gene_synonym="4921511I05Rik"
                     /note="putative"
ORIGIN      
        1 gacattactc acctcggctc agggattgca cgggtgcctc aaaacactcc tacagtatcc
       61 tcggagctgc ttttgataag ccatggccca ggacaagata aaacaaaaag atgcagtgaa
      121 gcaggctcag gtggtagaca tggatgaaca ccagaaaact aaggaaccca ggaaattaga
      181 aatgttcctg gtaacacttc caactgcagt gaagaagttt gcagatacac cagatatgaa
      241 aaagtcagat cgaaaataca aagatccctc ggaggagcca tatggtttgg gctctctcgt
      301 tttcccttgt ttacagcgtt tcaacaatgt taagtccttc ctgactctgt cgtttttagc
      361 ggtcgtggct catagtatga tatttgctct tgttgatcag tctataaaac tttacgtggc
      421 tcaactatct ccatcacgga tagaggaata cttaatggat actagtgata attttgttgc
      481 ttttctgttc tcaatgtttg tagcacactt tggaggtaga ggaaatagag caaattgggt
      541 ggcagctggc tgctttctaa caggaattgc tgcaattgtt tttgctgttc ctttccttaa
      601 ttttgaaatt ataaaactga gcgtagtaaa agaagagttg tgcgaggaag gaaaattacc
      661 taaagtttgt gaaccaacgg tattgccaca caaatcaatt tgtatcttta tcttcatctt
      721 cgggcagtgt ctccatggaa tagcaggctt gccattgtat atacttgcca caagctttat
      781 ttttgaccac gttcccacaa actcatctgg attatatata gctcttgtag atgctgcact
      841 aggggttgga tactgtctgg gttttatagg aggaatgcta aattttaaga tgtctgcgca
      901 agaagttatg caagcagttg gacatcgtca gaggattcga atactgcagc gtggttggtg
      961 gagaactttt atatttgttg ctgtatttgc attttgtaca actttaccac tgttgggttt
     1021 tccctctagt ttacctggtg cacgccagat aagacttgag aaaagtcagg aacctcctac
     1081 ctttgacagg agacttaaaa ataaggaaat taagaataat ttgaagagtg ttcttcatgc
     1141 tacttggtgt ctaataagga acccactggt gctgtcccaa gtagtatgca aattcacaga
     1201 gtttacaact tttaagtcat ctgcagtttt tttgccccaa tatttacaaa ctcggttttt
     1261 aataagacca tcaagtgcct ctatgctcac aggtgttttt atattaccgg gaagtatatt
     1321 tggccacttt tttggaggct ttattgttca cagaatgcaa atgaataata agaacaaatt
     1381 gaaattttta gtagtagcat cttttgtgtc aattgtgctt ttcctattaa ccttttttgt
     1441 ggagtgtgaa atatcaaagt ttgctggaat caatgatgat tatgataggc ttggtataat
     1501 tggaaacctc acagctccat gcaatgtgcc ctgtggttgt acaacttctg aatataatcc
     1561 tgtatgtgga agagatgaga cacaatattt ctctccctgc tttgcaggtt gcaaagctac
     1621 taaaaagcta aggaaggaaa agacatacta caattgttct tgcatcaaag aaggattgac
     1681 aactgctgat aatgaaggtc aatatattga tgctgtttct ggaacatgta ataccagatg
     1741 ccttacattg cctttatttt ttgcctttta ctttactgca acctttttgt ctagtttctg
     1801 tagtatacct tccgccttga ttgtcattca aagtgtacct accagttgga attcaatgag
     1861 tttgggttta atgtcgacag tttggagatt cactggctct gttcctgcac caatattatt
     1921 tgcagcaaca tcagatttta cttgtcaatt ctggggtatt aatgaatgtg gagaaaaagt
     1981 acggtgttgg atctataata cagaaaattt ggtctacaca tttaagacag tatggattaa
     2041 catgcaaata ttgtcaggct tgagttgtct ttacggggtt tacagacatg attatgtggt
     2101 aaaaggagat ggtaaaaaag cagaagaaaa gtaagaacat taatttcaaa ctgatttctt
     2161 cattgagact ggacaatctg tgatgttctg agttctaagg actgcagtct attctttgaa
     2221 gttttcataa gatgtggtct atgccataat ttcagaaaag aaaaagaaca ttaaaatatc
     2281 tatgtggatc tttattttca taataaaaat actcatatga aacacttt
//
