LOCUS       NM_028942               2433 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus solute carrier organic anion transporter family,
            member 6c1 (Slco6c1), mRNA.
ACCESSION   NM_028942
VERSION     NM_028942.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Lin,S., Ke,M., Zhang,Y., Yan,Z. and Wu,J.
  TITLE     Structure of a mammalian sperm cation channel complex
  JOURNAL   Nature 595 (7869), 746-750 (2021)
   PUBMED   34225353
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Willnow,T., Antignac,C., Brandli,A., Christensen,E., Cox,R.,
            Davidson,D., Davies,J., Devuyst,O., Eichele,G., Hastie,N.,
            Verroust,P., Schedl,A. and Meij,I.
  TITLE     The European renal genome project: an integrated approach towards
            understanding the genetics of kidney development and disease
  JOURNAL   Organogenesis 2 (2), 42-47 (2005)
   PUBMED   19521566
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK029505.1.
            
            On Jul 25, 2007 this sequence version replaced NM_028942.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029505.1, AK132668.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2433              AK029505.1         2-2434
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 47.76 cM"
     gene            1..2433
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /note="solute carrier organic anion transporter family,
                     member 6c1"
                     /db_xref="GeneID:74441"
                     /db_xref="MGI:MGI:1921691"
     exon            1..451
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             130..2250
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /codon_start=1
                     /product="solute carrier organic anion transporter family
                     member 6C1"
                     /protein_id="NP_083218.1"
                     /db_xref="CCDS:CCDS35677.1"
                     /db_xref="GeneID:74441"
                     /db_xref="MGI:MGI:1921691"
                     /translation="MAHVRNKKSDDKKAMVVAKEDTNKSESEGVTKLQTYLKTIPIAK
                     KKFAKLPKRKKSPTSAELLLIDPRYSASKEGPLGLGPIVLPFVQRFNNIDGFMTLYVA
                     AVLIHGALFAVVDMTLNIYQVQFSLTRTEWYLMDFSDYIASFVVAIIIAHFGSKGNRT
                     RWIAASCILMGLESMLFAFPFFTYEIIIPGRQSIELCMEENEKRNIICGNSVPNRSKC
                     IYFHIAGQCIHGIAGMPIYILGITFIFDHIPTSSCGFYLAIGHSAYLIGYLLGMVGGL
                     QNFQPPPKEKTVEIEPAKVYQLLQSGWWKTFLIIAAISFCVSFMMVCFPTSLPGAHKL
                     RLAKRKEPPTIDRRLKDMKIQPHLKGFLHNIWHILKNPLMLTQAICKVSEYLTFNTSL
                     YFLPHHLQTQFLITPGIASLLTGAFVLPGGIIGHFLGGLIVDRLEMTNKNKLKFTLVT
                     TVVSVGLFLLIFFVECQTTTFAGINEDYDGYGQLGNLTADCNEYCDCTTSLYTSICGR
                     DEKEYFSPCFAGCKATKVSQTEKTYYNCSCIKEGLAASDDEGQFIDAIAGTCDSDCLK
                     LPLFFAFYFSATVFSNMCSIPVISIILQSVPANFTSLSLGVTYAIVKFVASVPAPLLF
                     RLSSAIACIYWDNNRCGGKERCWIYNKNILVYEFMGIWMSSQLIIVLLNIYAIQIHDV
                     VVHGEITESKTTVKDVKEQKERKA"
     exon            452..712
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            713..901
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            902..998
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            999..1117
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1227
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1372
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1568
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..1722
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1723..1910
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1911..1975
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1976..2113
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2114..2273
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2274..2433
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2433
                     /gene="Slco6c1"
                     /gene_synonym="4933404A18Rik"
                     /note="putative"
ORIGIN      
        1 gaaataacgt ttcctgcaga ggttagagtg gcagctctct tacggacagt gttagtcacc
       61 tgagaccagg gagtacacag gtgcctcaaa acatacctgc agtgtccaca gagctgcttc
      121 agataagcca tggcccatgt ccgcaataaa aagtcagatg acaaaaaggc tatggtggta
      181 gcgaaggaag atacaaacaa aagtgaatct gagggagtca cgaaattaca aacgtatctg
      241 aaaacaatac caattgccaa gaagaagttc gcaaagctcc caaaaaggaa gaagtctcct
      301 acaagtgccg aactgttgtt aatagatcca agatacagtg cttccaagga ggggccactt
      361 ggtttgggcc ctatagtttt gccttttgta cagcgtttca acaacattga tggctttatg
      421 actttatatg ttgcagcagt cttaattcat ggtgctttat ttgctgttgt tgatatgact
      481 ttaaacatat atcaagttca attttctctg acgaggacag agtggtattt gatggatttc
      541 agtgattata ttgcgtcttt tgtcgtagca ataattatag cacactttgg aagtaaaggg
      601 aacaggacaa gatggattgc agcttcctgc attttaatgg gacttgaatc gatgttattt
      661 gcttttcctt tctttacata tgaaattata ataccgggaa gacaaagcat agagttgtgc
      721 atggaagaaa atgaaaagag aaatataatt tgtggaaact cagttccgaa cagatcaaaa
      781 tgtatctatt tccacatcgc tgggcagtgt atccatggca tagcagggat gccaatttat
      841 atccttggca taaccttcat ttttgaccac attcccacaa gttcatgcgg cttctattta
      901 gctattggac attctgcata tctgatagga taccttctgg gtatggtagg aggactgcag
      961 aattttcagc ctccacccaa agaaaaaaca gtcgaaattg aaccagcgaa ggtgtaccaa
     1021 ctgttgcaga gtgggtggtg gaaaactttt ttgattattg ctgcaatctc attttgtgta
     1081 tctttcatga tggtatgttt tccaactagt ttacctggtg cacataagtt aagacttgcg
     1141 aaaagaaagg aacctcccac cattgacagg agacttaaag atatgaaaat tcaacctcat
     1201 ttgaagggtt ttcttcataa tatttggcat attttgaaga acccactgat gctgacccag
     1261 gcaatctgca aagtctcaga gtatttgact tttaatacat ctttatactt tttgccccac
     1321 catttacaaa ctcagttttt aataacaccc ggaattgcct ctctgctcac aggagcattt
     1381 gtacttcctg gaggcataat tggccatttt cttggcggtt taattgttga caggttggaa
     1441 atgactaata agaacaagct gaaatttaca ttagtgacaa ctgttgtatc agttgggctt
     1501 ttcctattaa tcttttttgt agagtgtcaa acaacaacat ttgctggaat caatgaagat
     1561 tatgatggct atggtcaact tggaaacctc acagctgact gcaatgagta ttgtgattgc
     1621 accacttccc tctatacttc catatgtgga agagatgaaa aagaatattt ttctccctgc
     1681 tttgcaggct gcaaagctac taaagtatcc cagacagaaa agacatacta caattgttct
     1741 tgcattaaag aaggattggc agcttcagat gatgaaggtc aatttattga tgctattgct
     1801 ggaacatgtg acagcgactg tcttaagtta cctttatttt ttgcctttta cttttcggct
     1861 actgtttttt ctaatatgtg cagtatacct gtcatctcaa ttatcctcca aagtgtacct
     1921 gccaacttca cttcacttag cctgggtgtg acctacgcca ttgtgaaatt tgttgcatct
     1981 gtccctgcac cactcttgtt tcgactgtcg tcagctatag cttgtatata ctgggacaat
     2041 aatagatgtg gagggaaaga acgttgttgg atctataata agaacatatt ggtctacgaa
     2101 tttatgggaa tatggatgag ttcccaatta atcatagtct tgttgaacat ttatgcaatt
     2161 cagatacatg atgttgtggt acatggagaa atcactgaga gcaaaaccac tgtaaaagat
     2221 gtaaaagaac aaaaagaaag aaaggcttaa tttctaaatg atttcttcat tgggactgga
     2281 gaatctgtga agttctgagt tctaaggact gcagtctatt ttttattttt tggagatttc
     2341 ataagatgca gctatgctac aatttcagaa gagaaaaaga atattaaatc atctatgtgc
     2401 aatctttatt ttcataatta aaataatcat atg
//
