LOCUS       XM_006517083            3920 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus solute carrier family 6 (neurotransmitter
            transporter, dopamine), member 3 (Slc6a3), transcript variant X1,
            mRNA.
ACCESSION   XM_006517083
VERSION     XM_006517083.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000079.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006517083.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3920
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="13"
     gene            1..3920
                     /gene="Slc6a3"
                     /gene_synonym="DAT; Dat1"
                     /note="solute carrier family 6 (neurotransmitter
                     transporter, dopamine), member 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 11 ESTs, 169 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:13162"
                     /db_xref="MGI:MGI:94862"
     CDS             754..2481
                     /gene="Slc6a3"
                     /gene_synonym="DAT; Dat1"
                     /codon_start=1
                     /product="sodium-dependent dopamine transporter isoform
                     X1"
                     /protein_id="XP_006517146.1"
                     /db_xref="GeneID:13162"
                     /db_xref="MGI:MGI:94862"
                     /translation="MSKSKCSVGPMSSVVAPAKEPNAVGPREVELILVKEQNGVQLTN
                     STLINPPQTPVEVQERETWSKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGVGFTVI
                     LISFYVGFFYNVIIAWALHYFFSSFTMDLPWIHCNNTWNSPNCSDAHSSNSSDGLGLN
                     DTFGTTPAAEYFERGVLHLHQSRGIDDLGPPRWQLTACLVLVIVLLYFSLWKGVKTSG
                     KVVWITATMPYVVLTALLLRGVTLPGAMDGIRAYLSVDFYRLCEASVWIDAATQVCFS
                     LGVGFGVLIAFSSYNKFTNNCYRDAIITTSINSLTSFSSGFVVFSFLGYMAQKHNVPI
                     RDVATDGPGLIFIIYPEAIATLPLSSAWAAVFFLMLLTLGIDSAMGGMESVITGLVDE
                     FQLLHRHRELFTLGIVLATFLLSLFCVTNGGIYVFTLLDHFAAGTSILFGVLIEAIGV
                     AWFYGVQQFSDDIKQMTGQRPNLYWRLCWKLVSPCFLLYVVVVSIVTFRPPHYGAYIF
                     PDWANALGWIIATSSMAMVPIYATYKFCSLPGSFREKLAYAITPEKDRQLVDRGEVRQ
                     FTLRHWLLV"
ORIGIN      
        1 tgctgtgacc tggctaggaa cgcaggtggg ccacctccac agcaccggga ggtgcgtccc
       61 acttgctttg tctccgagcg gaactggagt tggaaaatct tgctcgcagg ttggttgttc
      121 agggacaagg gagcagggtc ggagagtcat acaacatcga agggagaact ggggagaccc
      181 gggtgagcct tgggagctcc gcacagatcc acatgcgctc gccacttcac tctcttcccg
      241 ggatctgttt ctgacaacct tgctgaaacc agttgttggg agactcatgc aggcgctggc
      301 cgaggagagc gaacagggac ggagacttgg actgctccct cctggaaacc aactgtccct
      361 ccggtctgca acgcgtccaa cctggagata cactgatccc acgtggccga gactctataa
      421 ccttgcaaag acacctgcca aactccttgc ctgcctaggc tcagtggcct ctggctcccc
      481 gaagtcatcc tagtccccaa gtggtgcagg ggcgctgccc agcccgtcct ccgcccaccc
      541 tgggcggaac agaggcggag ccagtgccag tgggcgcccc cgacggcggg cggggctagg
      601 cggaccgacc cggaggcccg ataagagctc aaggctgaga cctgccagag ctgtgaagcg
      661 cgactggagg cttacaggac ctcaaagctg aagtctgacg ctggaggcag tcgaagaaga
      721 aggaaacaga cttcctcggg ctcccgtcta cccatgagta aaagcaaatg ctccgtggga
      781 ccaatgtctt ctgtggtggc cccggctaaa gagcccaatg ctgtgggccc cagagaggtg
      841 gagctcatct tggtcaagga gcagaatgga gtgcagctga ccaactccac cctcatcaac
      901 ccaccgcaga caccagtgga ggttcaagag cgggagacct ggagcaagaa aatcgatttc
      961 ctgctctcag tcatcggctt cgctgtggac ctggccaatg tctggaggtt tccctacctg
     1021 tgctacaaaa atggtggagg tgtgggcttc actgtcatcc tcatctcttt ctacgtgggc
     1081 ttcttctaca atgtcatcat tgcatgggca ctgcactact tcttctcctc cttcaccatg
     1141 gacctcccat ggatccactg caacaacacc tggaacagcc ccaactgctc tgatgcacat
     1201 agcagcaact ctagcgatgg cctgggcctc aacgacacct ttgggaccac acccgctgct
     1261 gagtattttg agcgtggtgt gctgcacctc catcagagtc gtggcattga tgacctgggc
     1321 cctccacggt ggcagctcac agcctgcctg gtgctggtca ttgttctgct ctacttcagc
     1381 ctgtggaagg gagtaaagac ttcagggaag gtggtgtgga tcacagctac catgccctat
     1441 gtagtcctca cagccctgct cctgcgtgga gtcaccctcc ctggggccat ggatggcatc
     1501 agagcatacc tcagtgtgga cttctaccgt ctctgtgagg catctgtgtg gatcgatgcc
     1561 gccacccagg tgtgcttctc ccttggcgtt gggtttgggg tgctgattgc cttctccagt
     1621 tacaataagt tcaccaataa ctgctataga gatgcaatca tcaccacctc cattaactcc
     1681 ctgacgagct tctcctctgg cttcgttgtc ttctccttcc tggggtacat ggcacagaag
     1741 cacaatgtgc ccatcaggga tgtggccaca gatggacctg ggttgatctt catcatctac
     1801 cctgaggcaa tcgccacact cccgctgtct tcagcctggg ccgctgtctt cttcctcatg
     1861 ctgctcactc tgggtatcga cagtgccatg gggggcatgg agtctgtgat cactgggctt
     1921 gtcgatgagt tccagctgct acatcggcat cgagagctct tcactcttgg cattgtcctg
     1981 gctactttcc tgctgtctct cttctgtgtc accaacggtg gcatctatgt cttcacactg
     2041 ctggaccact ttgcagctgg cacatctatc ctctttggag tgctcattga agccattggg
     2101 gtggcctggt tctacggtgt ccagcaattc agtgatgaca tcaagcagat gactgggcag
     2161 cgacccaacc tgtactggcg gctatgctgg aagctggtca gcccctgctt ccttctgtat
     2221 gtggtcgtgg tcagcattgt gaccttcaga cccccacact atggagccta catcttccca
     2281 gactgggcca atgccctggg ctggatcatt gccacatcct ccatggccat ggtgcccatt
     2341 tatgccacct ataagttctg cagcctgcca gggtccttcc gagagaaact ggcctatgcc
     2401 atcacacctg agaaagaccg ccagctagtg gacagagggg aggtgcgcca attcacgctg
     2461 cgccattggc tgttggtgta aagtggaagg agacagctgc cagctgggcc atctcacaac
     2521 agcggggaca gggagatcac aaaggaaacc aacacgtcaa gaaaggaggg ccacttccac
     2581 agtccccttt tgccatatgg aaaaataatc caagcatggg cttcaatctt tgactgttca
     2641 cacccaatcc atgccacaaa gaagcctctg tctgtgtgtg actgtaaaaa cacacacctc
     2701 tatacagtga agtcaaccat gtccctgtcc ctaatgggtg gggaaacccc tagctggtat
     2761 cctgtcctgc aaggctgact cccccatctg tggtcactct gggagaacag gtcatactgt
     2821 tccctgcatt ctaggagagg gactttggta cctgtatata cactgtgcca gaatcctgtg
     2881 ctcacggtag ttgcctagat aatttctttt gcttaaattt acagtgtcaa gtatcctatt
     2941 ttttgctgtt ggtagaaaag acagttaata catgccaagt cctttcctgg tgcttggctc
     3001 cgagcagaca ccatgacctt agcatcctgt tcacatatta cacacacgca gggtctgttc
     3061 tgagccacgg aggacaaggg acttggtgca ggtgaccaga ggttagggtt tttttttttc
     3121 cctttattgc tgagataaaa ttcatgaatt caggttggga gacaagccct actcctggcc
     3181 cctggaaggc ctggtcagct tgcagccact ttagtatgga cttgtagacc acagagaaag
     3241 tgtacttctc ctagccagtg tgtccctgcc tcctggacac ctgctcttca cagagtctca
     3301 atgcaacctg aagatcatat tcttggcctg gagccctgcc tggttttcgg ggaaagacac
     3361 ccacttcttg ggtttgattt ccgactggct cctgtcatac ccatggacat tatccatgtt
     3421 ataaatggct ttttaaaacc atatttatgt gtgaatcaaa attattctca aagtgtaagg
     3481 ttagtttgtt caaatccatt tgctgaagag tagttagcat aagaagaagg tatgccaaaa
     3541 ataccttctc ctggagagct ggctttaacc tctgaagtga aaagtggaag tcatgatttt
     3601 ccttgagctc ataactgtga actttggcct agcctgtgtc ccatagaaat ggcaccatgt
     3661 gtctgtctga gagccaacct taggtattct ctgcaagtag acagtggcac gaagatcttg
     3721 aatgtgctac cagggtggaa atgcaggcct gttggctctg cagactgtag cgtggctgag
     3781 aagaatcagg tttaccatct cctctcagag ctgagtggct ccatgtataa atccaggtgt
     3841 tgtcagcatc tgttatttat gtctatagcc agtaccttgt tgtgggtcct tataaacaat
     3901 aaaagaaata tatgttggaa
//
