LOCUS       NM_001033176            2996 bp    mRNA    linear   ROD 08-AUG-2023
DEFINITION  Mus musculus solute carrier family 6 member 21 (Slc6a21), mRNA.
ACCESSION   NM_001033176 XM_006541270 XM_145587 XM_914698
VERSION     NM_001033176.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC150897.2.
            
            On or before Mar 2, 2023 this sequence version replaced
            XM_006541270.1, NM_001033176.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               AC150897.2         68833-68962         c
            131-260             AC150897.2         68056-68185         c
            261-535             AC150897.2         66317-66591         c
            536-693             AC150897.2         66036-66193         c
            694-820             AC150897.2         65826-65952         c
            821-1002            AC150897.2         65558-65739         c
            1003-1116           AC150897.2         63909-64022         c
            1117-1358           AC150897.2         63483-63724         c
            1359-1545           AC150897.2         59822-60008         c
            1546-1747           AC150897.2         59367-59568         c
            1748-1907           AC150897.2         59083-59242         c
            1908-2073           AC150897.2         58593-58758         c
            2074-2996           AC150897.2         57456-58378         c
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 29.23 cM"
     gene            1..2996
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /note="solute carrier family 6 member 21"
                     /db_xref="GeneID:76713"
                     /db_xref="MGI:MGI:1923963"
     exon            1..130
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            131..260
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            261..535
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..2535
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /note="solute carrier family 6 (neurotransmitter
                     transporter), member 20B pseudogene"
                     /codon_start=1
                     /product="solute carrier family 6 (neurotransmitter
                     transporter)-like"
                     /protein_id="NP_001028348.2"
                     /db_xref="CCDS:CCDS21238.1"
                     /db_xref="GeneID:76713"
                     /db_xref="MGI:MGI:1923963"
                     /translation="MDQSFEDFLELKNKPVEEVHTASKKSDNPTSVSRGFRTREVRVT
                     KIPNHFQAKKTENILILVAFSIGLGSTWRFPYLCHQNGGGSFLLMYFILLLLLGIPLM
                     YMEMVIGQWLRMDNIQAWKYLVPWLSGVGYSNILACVLVVLYNSALVSWSLFYLGQSF
                     DYPLPWQNCPLVENLSMVAGNTCLWSEPHQYFWYHTLLQASNQMEEGIEVLVLNVTLC
                     LFATWIFLYVTMVTRIKISVLMMIFSILFSNVLLLCFFIRTLFLNGSVRASLWRLVTI
                     ELSILSSLDAWRQAGGHVLYSLGLGMGTIITFSTYQPRGENYIKWASFVAMVNLATSL
                     LSSFVIFLVMGFWTTTSGTMCIKRSVSNLINLIANGVLPKAAWPPGDIIHKPPLEYLA
                     WINQLPNNLKSQVIHQTLPCSILIQKEKIMEGPGLSYVAFSQAISLFPGSSFWAIIFF
                     MSLAIMGLGTMLTLLEGIVLPLQKSISTFAKHPNLVQVLVCLGGFLGSLVFSSRPGSY
                     VVFLFDDLLVPMVLIIIVVIQNLSLAWLYGIKRFRAEVFGQLGSLVWSPFTFLWSYVT
                     LPTLLVLLTIYFLNLYYSGSPYYVSWNDSMSHEVKQPYKKIPLGWVTFLSVLALLPIL
                     VYPLQHWWYLDDPNICETLEKPLSSKKTVTVPNRVTQWPVHPMRKLTLRNQEKSKALF
                     QSKSPPENFLHPQTLITKKDSENYSTFSLPDATLPSQVGFSTLAIHEVSKYTGHSESF
                     LDSQNTGKK"
     exon            536..693
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            694..820
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            821..1002
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1116
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1358
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1545
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1747
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1907
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            1908..2073
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..2996
                     /gene="Slc6a21"
                     /gene_synonym="1700039E15Rik; Gm19188"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcccgacc gctagccctg cccacttgga agcccgtcca cggcgaggcc gccgtttcct
       61 tcctggccgc gcgggggcgc cgtcgggacg ctgctggcgg ggctgtctcg atttaggaag
      121 ccgaccaaag gccttgaacc ttaaactaaa acttcaaatg tcaaccagac aactggagag
      181 gcagagagct tagcagctaa gaggcctacc acagacatag gcactcccaa cagcttatat
      241 catcagctcc gggagatcag gagtcgagcc agtgcagaga gcaccatgga ccaatccttt
      301 gaagactttc tagaactcaa gaacaagccc gtggaggaag tgcacacagc aagcaagaag
      361 agcgacaacc ccacatctgt gtcccggggc ttcaggacca gagaggtccg cgttaccaag
      421 atcccaaacc acttccaggc taagaagacg gagaatatcc taatcctggt ggccttctcc
      481 atcggactcg gcagcacgtg gcgcttcccg tacctctgcc accagaacgg aggcggaagc
      541 tttctgctga tgtatttcat ccttctcctg ctcctgggca tccccctcat gtacatggag
      601 atggtcattg gacagtggct acgtatggac aacatccagg cctggaaata tctggtcccc
      661 tggcttagtg gtgtgggcta ctccaacata ctggcttgtg tcttggtggt cctgtataac
      721 agtgccctgg tctcctggag ccttttctac cttggccagt ccttcgatta ccctctaccc
      781 tggcaaaact gccccttggt agaaaactta agcatggttg caggcaatac ctgcctttgg
      841 tcagagcctc accagtattt ctggtatcac actctccttc aagcctccaa tcaaatggaa
      901 gaagggatag aggtgctggt cctgaacgtg accctgtgcc tctttgccac gtggatcttc
      961 ctctatgtca ccatggtcac caggataaag atctcagtgc taatgatgat tttctccata
     1021 ttgttctcca acgtcctcct cctctgcttc ttcatccgca ccctcttcct gaacggcagc
     1081 gtgagggcca gcctctggcg cctggtgacc atagagcttt ccatcctgtc atcactggac
     1141 gcatggcgtc aggctggagg ccatgttctc tactccctcg gcctcggcat gggcactatc
     1201 ataactttct ccacctacca gcctagaggt gagaattaca tcaagtgggc ctcctttgtg
     1261 gccatggtca acctggcgac ttcgttgctg agctcattcg tcatcttcct cgtgatgggc
     1321 ttctggacca caaccagcgg cactatgtgt attaagagga gtgtctccaa tctgatcaac
     1381 ctgatagcca acggggtcct ccccaaggcc gcctggcctc ccggagacat catccataaa
     1441 cccccactgg aatacctagc ctggatcaac cagcttccca acaacttaaa gagtcaggtc
     1501 atccatcaaa ccctgccctg cagcatcctg atacaaaagg aaaagattat ggagggccct
     1561 ggcctgtcgt atgtggcctt ctctcaagcc atctcactgt ttcccggctc ctctttctgg
     1621 gccatcatct tcttcatgtc cctggctatc atgggtctgg gcaccatgct aactctcctg
     1681 gagggcatcg tgcttcctct gcagaaaagc atctctacct ttgcaaagca tcccaatctg
     1741 gtacaagtgc ttgtctgctt gggaggattt ctggggagcc tcgtcttctc cagccgccct
     1801 ggcagctacg tggtattcct gttcgatgac ctcctggtcc ccatggtgct catcataatt
     1861 gtggtgatcc agaacctgtc tctggcttgg ctctatggaa tcaagaggtt cagggctgag
     1921 gtgttcggcc agctgggcag cctggtgtgg tcacccttca ccttcctgtg gagctacgtg
     1981 acgttgccca cactgttggt cctgctcacc atctacttcc tgaatctcta ctacagtgga
     2041 tccccctact atgtctcctg gaatgatagc atgagccatg aagtgaagca gccttacaaa
     2101 aagatacccc tgggctgggt caccttcctc agtgtcctgg cactgctgcc gatcctcgtg
     2161 tacccgctgc agcactggtg gtatctggat gacccaaaca tctgtgaaac cttagaaaag
     2221 cctctgtcct ccaaaaagac agtcacggtg cccaacagag tcacccagtg gcctgtgcac
     2281 cccatgagga aactcaccct ccgaaatcag gagaaaagca aggctttatt ccaaagcaag
     2341 agtcccccgg agaacttcct tcacccccag accctgataa caaaaaagga cagtgagaac
     2401 tattccacct tcagcttgcc cgatgccacg cttccttctc aggttggctt ctccaccttg
     2461 gccatccatg aggtgtcaaa gtacaccggc cactcagaat cctttttgga ctcccaaaac
     2521 actggaaaga agtgacaggc ttgcgacttg tgaaggagag gctcgtgaga gccctgctta
     2581 gcagcggcca gccacatcgt cgggtctcgg taaccagtga tgggcgccaa gcctttagca
     2641 caggcaaggc cccacggaaa gcaaaagaca gggtatgcag accccagccc agacttctgc
     2701 gggagccccc acggccccca gacagtcatg gatgacgcat tggtccatcc tctagcactg
     2761 gacactgtgc ccagggcagg ccccaggccg ccttccctct ctttgatacg gacacaattt
     2821 tggtgtgccc agatgggcat ctggcacagt cccagttacc gagagacaca gtgatccccc
     2881 taaccctgcc tagccatcgt acctgtcaga agtgaggctg acctcccagg gatggccatc
     2941 acagatggca ccaagatagc aatgttgcct gtcaataaat gaggcggtgg acgaca
//
