LOCUS       NM_172574               1928 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier family 66 member 3 (Slc66a3),
            transcript variant 1, mRNA.
ACCESSION   NM_172574
VERSION     NM_172574.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1928)
  AUTHORS   Quintens,R., Verreet,T., Janssen,A., Neefs,M., Leysen,L.,
            Michaux,A., Verslegers,M., Samari,N., Pani,G., Verheyde,J.,
            Baatout,S. and Benotmane,M.A.
  TITLE     Identification of novel radiation-induced p53-dependent transcripts
            extensively regulated during mouse brain development
  JOURNAL   Biol Open 4 (3), 331-344 (2015)
   PUBMED   25681390
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY236955.1, AK138680.1, AK150094.1, AK053171.1 and AC155305.2.
            
            On May 28, 2009 this sequence version replaced NM_172574.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC025220.1, AK053171.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                BY236955.1         1-49
            50-91               AK138680.1         49-90
            92-1164             AK150094.1         4-1076
            1165-1920           AK053171.1         1114-1869
            1921-1928           AC155305.2         165321-165328       c
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 8.04 cM"
     gene            1..1928
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /note="solute carrier family 66 member 3"
                     /db_xref="GeneID:217430"
                     /db_xref="MGI:MGI:2444067"
     exon            1..306
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            307..389
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            390..459
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            460..517
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            518..638
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            639..680
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     exon            681..1928
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1898..1903
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /note="hexamer: AATAAA"
     polyA_site      1928
                     /gene="Slc66a3"
                     /gene_synonym="E030024M05Rik; Pqlc3"
                     /note="major polyA site"
ORIGIN      
        1 gagcagactc ggggcggagc gcacttgctg cacagcagct cggggcgtga tcagggcggg
       61 acccggccgg cggcaaggcg gaaggacttt ttggactttg agcctccggt tctcacctat
      121 aagatcctga acccccctgg cccggcacgt ccgagattgc agaatggagg ccggactgct
      181 atggttctgc aactggagca cgctgggcgt ctgcgccgca ctcaagctgc cgcagattta
      241 cgcgcagctg gcggcgcgca gcgcgcgggg catcagcctc cctagtttac ttttggagct
      301 ggcggggttc ctggtcttcc ttcgttatca gcattactat gggaacccac tgctcaccta
      361 tctggaatac cccattctca tcgcacaaga cattgtcctc ctgctcttcg tctttcattt
      421 caatgggaac gtgaagcaag ccttacccta catggccgta tttgtgtctt cttggttcat
      481 cctcagcctg cagaaatgga tcatcgactt ggccatgaac ttatgcacag tcattagtgc
      541 agccagtaag tttgcccagc tccagtattt gtggaaggta caagattcag gagctgtgag
      601 cgcactgacc tggggccttt ctgcctacac ctgtgcaaca agaataataa caactttaat
      661 gaccaccaat gacttgacaa ttcttatacg ttttgtgatc atgttggctt taaatatatg
      721 ggtaacagca acagtacttc actaccggaa gtctgccacc aaagctgaat gatggatgtc
      781 ttcttcctac acacagtgga cttcaaacga ctggaccaga tgatgcacca ttgctttcca
      841 ttgctacatt taaaatcttt tactagtcaa ccatttcaga aactttaaag caggtttgtt
      901 aaacttgaaa aagccactta gctgaatacg ggaagtgcaa acctataatc ccagcacttg
      961 ggagtctgag gtagcctggg ctacacagca aactcagaga aggaagacta ggagagatgg
     1021 aaagagacac ttgtataaaa tgccaacttc cttcccccca gtcccctagg ttgtggaagg
     1081 gcttagattg ggttgtgtgt ggttttttgt ccctcccttc cccacaagat aaagtctcac
     1141 tatatagccc aagctatcct ccaacctgtg atcctccagc agccttttga gcactgggag
     1201 tgctggacaa gagtggacca ctcttgactt tgacaactca aatgatggaa cctgcccaag
     1261 aggccatctt cacccttaaa gtcatgatta tattccccga agagccagct acagctacac
     1321 tgtggctttc agaatattaa gtagtcttcc cacagtgagt ggggtctgct cagtaacaag
     1381 tggaactgtt cacacctggg cagtttaact cttccataaa cataatgcag tataacatcc
     1441 tctcaagcta agcagggcta gcaaagtatg cagagatgga actgggttca tataccaagc
     1501 agtcgtccaa cacagtgtgc cttactaaac agagccccat ctgtttagac gaggaaatct
     1561 caactgtctc tctatttaag cacaatccca ccatttttta aagggctata tctcacaatt
     1621 accactgttg gaactttgta taagttttag ttactggaag gtatacatac agtaaaaagt
     1681 attgctaagt cctagccaat tcttaggtat tttattcata ctaaagtaag aatatcctaa
     1741 gcatatccta aacactgttg tctgcagaac ttcctctgat gttttataaa tccagccttt
     1801 aaaagctcag tttcttcttc taagtgaatg tcattactct ggtatactgc aagaaagtaa
     1861 atgaagttta ctgaaaaatg tttagttttc tatatttaat aaactttaat ttgttgaacg
     1921 cccccgaa
//
