LOCUS       NM_172883               2717 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus solute carrier family 49 member 3 (Slc49a3),
            transcript variant 1, mRNA.
ACCESSION   NM_172883
VERSION     NM_172883.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK087226.1 and AK029021.1.
            
            On Jan 24, 2018 this sequence version replaced NM_172883.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029021.1, AK087226.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-319               AK087226.1         2-320
            320-2717            AK029021.1         111-2508
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 53.11 cM"
     gene            1..2717
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /note="solute carrier family 49 member 3"
                     /db_xref="GeneID:243197"
                     /db_xref="MGI:MGI:2442629"
     exon            1..383
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..1787
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /note="isoform 1 is encoded by transcript variant 1; major
                     facilitator superfamily domain-containing protein 7; major
                     facilitator superfamily domain containing 7A; major
                     facilitator superfamily domain-containing protein 7A;
                     solute carrier family 49 member A3"
                     /codon_start=1
                     /product="solute carrier family 49 member A3 isoform 1"
                     /protein_id="NP_766471.1"
                     /db_xref="CCDS:CCDS19511.1"
                     /db_xref="GeneID:243197"
                     /db_xref="MGI:MGI:2442629"
                     /translation="MAGTMDRLEDCNSPETSGTAGDALPSPRVYARRWVFLLVVSLLS
                     CSNAMLWLSFAPVADTIAQHFFLSMDQVNWLSLIYFVLSIPFGMAAIWVLDSVGLRGA
                     TILGAWLNFSGSVLRAVPCLPVRIPSPFAFFMSGQSLCALAQTLVVSSPAKLAALWFP
                     EHQRATANMISTMSNPLGLLIANVLSPALVKKADDIPMMLGIYIGPAALACLLATVCL
                     WESVPPTPPSTGAANSTSESFLRGLKLLIQNKAYVLLAVCFGGGIGVFSSFSALLEQI
                     LCASGYSNEFSGLCGALFIVFGILGALLLGLYVDRTKHFTEATKIGLCLTSMTSVAFA
                     LVSQLQGQTLALAAICSLFGLFGFSVAPVVMELAVECSFPVGEGASAGLIFVLGQAEG
                     MLIMLLLTALTVRRTGPSFSTCQQGEDPLDWTVSLLLLAGLCTLFTCVLVIFFNTPYR
                     RLEAESGGSSSPTMCARDPRTVSPTQVPPLETPGLTPPDEALKEAPGPASVSKGHSEW
                     AETMPRDV"
     exon            384..542
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            543..756
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            757..833
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            834..971
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1088
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1241
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1399
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1509
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..2717
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2154..2159
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /note="hexamer: AATGAA"
     polyA_site      2172
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /note="major polyA site"
     regulatory      2683..2688
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
                     /note="hexamer: AATAAA"
     polyA_site      2708
                     /gene="Slc49a3"
                     /gene_synonym="4732482E20Rik; Mfsd7; Mfsd7a"
ORIGIN      
        1 actgcgaacg tgttcctagt acaggccaca cacacacttg tatccaagtt acctctaaaa
       61 gggaattttt cccctccagt ttccaccttg ccgagtaatt ctggcttctt tcaccaaact
      121 tgtcctttgg ggcggagact aaccagatca ttccgccccg ccctgctcct gggacagcct
      181 gcctacagcc tcagcgcgtt gcagtgtatg aaagtgggcg gcctgcggac actggcatgg
      241 ccgggactat ggataggctg gaagactgca acagcccgga aacatctggg accgccggag
      301 acgcgttgcc tagtccccga gtgtatgcgc gtcgctgggt ctttctgctg gtggtcagcc
      361 tcctgagctg ctccaatgcg atgctttggc tcagctttgc acctgtagca gacaccatag
      421 cacagcactt cttcctgtcc atggatcagg tcaactggct gtcactaata tactttgtgt
      481 tatccatccc atttggcatg gctgccatct gggttctgga ctctgttggc ctccgtggag
      541 cgactatcct gggtgcatgg ttgaattttt ctgggagtgt gctacgtgct gtgccgtgct
      601 tgcctgtcag gattccaagc ccctttgcct tcttcatgag tggccagagc ctctgtgccc
      661 tggcccagac cctggtcgtc tcttctccag ccaagctggc tgccttgtgg tttccagagc
      721 atcagcgagc cacagctaac atgatcagca ccatgtcaaa tcctctgggc ctccttattg
      781 caaatgtgct gtctcctgcc ctagtcaaga aagcagatga catccctatg atgcttggca
      841 tctacatcgg tcctgctgcc cttgcctgtc tgttggccac tgtctgcctc tgggagagtg
      901 tgcctcctac cccaccatcc acaggggctg ccaactctac ttcagagagt ttcctccgag
      961 ggctcaaact gctcatacag aataaggcct acgtcctcct ggccgtatgc ttcggtggtg
     1021 gcattggtgt cttctctagc ttctcagccc tcctggaaca gatcctttgt gccagtggct
     1081 attctaatga gttctcaggc ctctgtgggg ctctcttcat cgtgtttgga attttggggg
     1141 cactgcttct aggcctgtat gtggatcgga ccaagcactt caccgaagcc accaagatag
     1201 gcctctgtct gacttccatg acctctgtgg cctttgctct ggtatcccag ctgcagggac
     1261 agacccttgc actggctgcc atctgctccc tctttgggct ctttggcttc tcagtggcac
     1321 ctgtggtcat ggagctggct gttgaatgct catttcctgt gggtgagggt gcctctgctg
     1381 gcttgatctt tgtcctgggg caggccgagg gtatgctcat catgctgcta ttgacggcac
     1441 tgactgtgcg gcgaacgggt ccatcctttt ctacctgcca gcagggtgag gaccctctgg
     1501 actggacagt gtccctgctg ctgctggccg gcctatgtac ccttttcacc tgtgtcttgg
     1561 tgatcttctt caacacccca taccggcgcc tggaggctga gtctggcgga tcctcttcac
     1621 ccacgatgtg tgccagggat ccaaggactg ttagtcccac ccaagtgcca ccacttgaga
     1681 ctcctggctt gactcctcca gatgaggcct tgaaggaagc tcctggccct gcttctgtct
     1741 ccaaaggaca ttcagaatgg gcagagacta tgcccagaga cgtctagtaa agcataggct
     1801 tgctagggtt tctttgattg tgcaagccat gctaaaagct ctgacagagg caaagtcgtt
     1861 agaagaccca gggtatgaca ggatggcctt ttggtcctca ggaagacgat gatggaattg
     1921 gaaataactg gtattgtatg gatagtggtc agttaggatg gaccctggtt aagccatatg
     1981 tgtggctact gcaagtgggc ctgtgcagag gcagagggag tgagttaggg gttcctggca
     2041 taagactggg agaagaactt gtctccactg tatgaccagg tactgagctt gattgtaaaa
     2101 tagcacagag ggcggtgagc tggtctgagt agagtaggga acatattctc tgcaatgaac
     2161 actcatggga aagtttgtgt gtccaacttt attgagctag ctgcaggttg cagcctgaat
     2221 ggtggagcag ctcacacttt ctcctccaca tgggtaagga tatagctcaa cactttgtag
     2281 tctaggttgt cagccacatc gatgagggaa aactctagca tctgattcac ctgagagtga
     2341 gcccaagata ggtggggtat cgatggggag ctcacgttgg tggagggagg aggaggagga
     2401 gggacaaggt tcctaggttc aagcagccca gacacggtaa cttacaggca ctgaacttca
     2461 ttcattggtt tcgagtcttg tttgacctgt tcagggatga agagggtcag atggccaagg
     2521 gcaaggcaag gggaggggct gggaatgtat gcaaggttag gtcagaaaag ggattgaagg
     2581 aagtggggca gagaggggtg ggagaaggga aggtgaaggg agagggtcat ggagggaaga
     2641 aaggggtggg atactgggag taatgtggtg gtgggagtgg caaataaatg gtacagacat
     2701 gctggaaacc tagacct
//
