LOCUS       NM_026244               5247 bp    mRNA    linear   ROD 23-APR-2024
DEFINITION  Mus musculus solute carrier family 39 (zinc transporter), member 9
            (Slc39a9), mRNA.
ACCESSION   NM_026244 XM_001472453 XM_891220
VERSION     NM_026244.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5247)
  AUTHORS   Song,L., Chen,H., Qiao,D., Zhang,B., Guo,F., Zhang,Y., Wang,C.,
            Li,S. and Cui,H.
  TITLE     ZIP9 mediates the effects of DHT on learning, memory and
            hippocampal synaptic plasticity of male Tfm and APP/PS1 mice
  JOURNAL   Front Endocrinol (Lausanne) 14, 1139874 (2023)
   PUBMED   37305050
  REMARK    GeneRIF: ZIP9 mediates the effects of DHT on learning, memory and
            hippocampal synaptic plasticity of male Tfm and APP/PS1 mice.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5247)
  AUTHORS   Shihan,M., Chan,K.H., Konrad,L. and Scheiner-Bobis,G.
  TITLE     Non-classical testosterone signaling in spermatogenic GC-2 cells is
            mediated through ZIP9 interacting with Gnalpha11
  JOURNAL   Cell Signal 27 (10), 2077-2086 (2015)
   PUBMED   26208885
  REMARK    GeneRIF: ZIP9/Gna11 interactions mediate the non-classical
            testosterone signaling cascade in spermatogenic GC-2 cells.
REFERENCE   3  (bases 1 to 5247)
  AUTHORS   Bulfone,A., Carotenuto,P., Faedo,A., Aglio,V., Garzia,L.,
            Bello,A.M., Basile,A., Andre,A., Cocchia,M., Guardiola,O.,
            Ballabio,A., Rubenstein,J.L. and Zollo,M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   4  (bases 1 to 5247)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY148507.1, BC072655.1, BC058649.1 and CO040789.1.
            
            On or before Aug 1, 2009 this sequence version replaced
            XM_001472453.1, XM_891220.2, NM_026244.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC072655.1, AK080462.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                BY148507.1         1-24
            25-2566             BC072655.1         1-2542
            2567-5223           BC058649.1         2764-5420
            5224-5247           CO040789.1         1-24                c
FEATURES             Location/Qualifiers
     source          1..5247
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 36.91 cM"
     gene            1..5247
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /note="solute carrier family 39 (zinc transporter), member
                     9"
                     /db_xref="GeneID:328133"
                     /db_xref="MGI:MGI:1914820"
     exon            1..762
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     CDS             667..1593
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /note="ZIP-9; zrt- and Irt-like protein 9; solute carrier
                     family 39 member 9"
                     /codon_start=1
                     /product="zinc transporter ZIP9"
                     /protein_id="NP_080520.2"
                     /db_xref="CCDS:CCDS49099.1"
                     /db_xref="GeneID:328133"
                     /db_xref="MGI:MGI:1914820"
                     /translation="MDDFLSISLLSVAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAG
                     LLCGTALAVIVPEGVHALYEEVLEGKHHQTSEMKQNGIASDKAAEISSVHEHEHSHDH
                     TQLHAYIGVSLVLGFVFMLLVDQIGSSHVHSSDDPETARPSSSKITTTLGLVVHAAAD
                     GVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKHLLVFALA
                     APAMSMLTYLGLSKSSKEALSEVNATGVAMLFSAGTFLYVATVHVLPEVGGMGHSHKP
                     DTTGGRGLSRLEVAALVLGCLIPLILSIGHQH"
     exon            763..871
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1072
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     exon            1073..1141
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1227
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1362
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..5230
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5204..5209
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /note="hexamer: ATTAAA"
     polyA_site      5223
                     /gene="Slc39a9"
                     /gene_synonym="2010002A02Rik; 2610511I23Rik;
                     4833420E20Rik; Zip9"
                     /note="major polyA site"
ORIGIN      
        1 gaagtgggag taatgaagag gtgccacttg gcggccatgg cagctgtagt attggcgact
       61 cagggtcagg gcctggctga gggaagtacc atgggtagca ccgggtgtag ggcagagaca
      121 gcatcgtgtc gactttgctg ttgaatcctc cgacccaagt gagagacttg caggacatct
      181 tgcccgactc tagactcgga aggtagtttg ctgggactgg tgggctggtc ccttccctgg
      241 gggcgtatca cctgcggtgc cacccctagg aacaggtaca gcgtgcgaag aagacacttg
      301 gctttacccc tctttcctac tgctaccagg ggccttgtct aggagcgggt cgtcgtgaca
      361 ctctcattcc gacgattgag gtctctttca gcacaatttc tccatctgtg accgaccgga
      421 atctcagtgg ctggcaaccg agtacctaag attgcgcgaa gttttctctg gtgctagagt
      481 cagcagaagg agcttgcttc ttaagagagt ggcgtgcttc gagaacaccc cggctggtgg
      541 caaggctgaa agaagtgggc aaattcccgt ttgcttggaa gaccacgcgt ttaaacagcc
      601 taagcgcctt tcgaaactgc tggaatctta aagcctggtg gtagagggtg actacgggag
      661 ggcagaatgg atgactttct ctccattagt ctgctgtctg tggcaatgtt ggtgggatgt
      721 tacgtggccg gaatcattcc tttggctgtt aatttctcag aggagcggct gaagctggtg
      781 acggtgctgg gtgctggtct tctctgtgga actgcactgg cggtcatcgt cccggaagga
      841 gtgcacgcac tttatgaaga ggttctggag gggaaacacc accaaaccag tgaaatgaag
      901 cagaatggga ttgcctcaga caaagcagca gaaatatcat ctgttcatga acatgagcac
      961 agccatgacc acacacagct acatgcctac atcggtgtgt cccttgtatt gggcttcgtt
     1021 ttcatgttgc tagtggacca gattggcagc tcccatgtgc attccagtga tgatccagaa
     1081 acagcaaggc ccagcagttc caaaatcacc accaccctgg ggctagtcgt ccatgctgca
     1141 gctgatggtg tagctttggg agcagcagcc tctacttcac aaactagtgt ccagttaatt
     1201 gtgttcgtgg caataatgct acacaaggct ccagcagcat ttgggctggt ttccttcctg
     1261 atgcatgctg gtctggagcg gaatcgaatc agaaagcact tgctggtctt tgcattggca
     1321 gcaccagcca tgtccatgct gacatactta ggattaagta agagcagtaa agaagccctt
     1381 tcagaggtca atgccactgg agtggccatg cttttctctg ctgggacatt tctttatgtt
     1441 gccaccgtcc atgtcctccc tgaagtgggt ggaatggggc acagccacaa acctgatacc
     1501 actggaggga gaggcctcag ccgccttgag gtggcagccc tggttctggg ttgcctcatc
     1561 ccgctcatcc tatcaatagg acaccagcat taaccattca ggttccagcc tcagtccacg
     1621 gccattgcca tctgggaaga agagcaagtg tgtgacgctc ctcacttcct cagtgtcttg
     1681 tctcgcctcg cccatctcca cccgtgttcc tagagtccga gggagatgag agtcaatcgt
     1741 ggagaagtgg aacagcgtac agcaggaaca tcagaattag acaaagactt tgtgttgtct
     1801 tttaaaggga ctttgatata ttgagttttg atgtttctct taaccctatt ctcagggaag
     1861 atggaattta gttttaaaga aaagtggaga acttcataca gtgaaatagt aattatgaaa
     1921 ctgcagtgtt ctgtaaagct aaagtttttc cccttagttt agaggctctg ccactttacc
     1981 cattggtttt taacatggtt ctcaccatgt aagactggtg ctttagcatc tgtgccacat
     2041 gccatgagag aaggtgggaa cacacatccc ttagatgcta aagacgatgg caactaattt
     2101 gaggttagaa taaggaaaat aagggcagga gacataagct gaactgaacc caaaaaagaa
     2161 acatccatca aaaggggtgt ttagagtctt caacaactcc tttgcacgtg cctccctaaa
     2221 caaagcctgc ccttccttct aaggggctgg ctttggaaga ggggtctgtt atcatatagc
     2281 attttttttt ttaaagtgtc ctttgcagaa tacttgtcta cagcacactc ttagtagcca
     2341 gattctgttc aggcccaggg tttccatcaa gaacagtatg ttcacaatga aattaagggg
     2401 tgttaatttt tctgggaatt tggatagtta ctgacatctt gtagtaacct ttttaaaaag
     2461 taacactatt acaaagtatg ttgtcctttt cttctaagtc ggtggttggt ggttctcaac
     2521 cctctgaagg ctgcattcct ttaatacagt ttctcatgtt ctggtgccct cccagccatg
     2581 aaattatttt gttgctactt cataactgta attttgctac tgttatgaat cataatgtaa
     2641 atgtctgata acaggatatc gatatgccac ccctttgggt gtcgtgactc acaggttgag
     2701 aactgctgtt ctaagtattt cttttagcag tcagcagtcc ctctgactga gcccttgccc
     2761 agggtggaga gcatttcttc cttctcccta gctcctgtgc aggagacggt agggctgtat
     2821 cagaggggag tatccgctgc tggctggtct caatctcctt gcaatcatgt ctgcatccca
     2881 ctcttccctg cgctctccct gcccccattg tgtagtacta ctgctcctgg tgatgtcagt
     2941 cctgtgtgag gtggattctc actacttgaa ccatgatgat gaagacagca ctgtctattc
     3001 ttcatttcct gtaactaagt tacctttgtg tcaagtacaa ccttattaca ccctcaaaaa
     3061 tgtcacctcc tggtgggagt tgacacagtc actagtactc tgataattta agcaattgag
     3121 acagcaaaag tatccaacag aggtaattct tccatgtttg ccaaaatctg aataaatcct
     3181 agtcagataa gtgtataata ctgtatttat attttctgta ccatttcaaa aacactttac
     3241 ataaagaggg agccaagact agtttcttca gatcagtgag tgcagtcatt tgtatttttc
     3301 tatgacacct atgccagcat gcctgtagtt ttctttcttt ctctcctaaa ttgtcactag
     3361 gtcagccagc agttatggga ttaaacatgt gtgccctctg ctggctgcag tgaagaaagc
     3421 agaaatggga tgcagttctg tgtggagctg gtgcccattg catcccatgc taaagtgtta
     3481 atgtgtgcag tgtggggtgt gggtgactct cttgattagg cacaaacagg tgactcggaa
     3541 aggtttgggc tcatctagtc cttccaaagt acagatgtct tgatctctct agaagttccc
     3601 tgtgtctggt ttgatttggg tagatgtagc ttctgtcatc tcgctccatg cagtggtcag
     3661 agatgttgtc ctggccagag cctctttcgt tcagcagtgc cttgccatct cactctaagt
     3721 ttggccagaa tatcatgttg ggtagggcct tggactctgg caaggactga accatcaaac
     3781 ttccaaatct gccttcccct ccgggcctca gtcatagtga actttccaaa gctggggcct
     3841 ttccaggcct ggaactattt attgcctgtg gacagtgcat cccttccctg cccagcaggc
     3901 tcagatagcc atgtgactct aaatagggct caaatgcatt agaggcagca ggaaccatgc
     3961 agaggcctct gttagtgggg ggaggttgct catgtggcag gcagtgcccc cagagcagcc
     4021 accttggtca ctttacaaca catttcagtt ccattttctt cctccttaag actccctctg
     4081 gaggtgtgga tgccttaatg cgcaaacaca tttgaacaca ttggtgatac ttaagctgct
     4141 gccacaatta caagtggaat tatgggctac caaagaagca actgatgaaa agcatgggcc
     4201 ctccttcctc atgaccaaag cagtcttaat tgggcttgga gtccctttct cccagaatct
     4261 agatggtctt cagattcgga gcaccctccc ctccccagtt cccagtgttg ccagtctcta
     4321 agtcagcagg gcagtgatgt cccatttgac tctgctttct gtgtgcactg tcgccagctt
     4381 gcatccttac aagcagactt cccggcctgg acatgtcagc agttggaacg gtactaccca
     4441 ctgagacagt gtcctctccc ctgcttcacc tcagtcctca gattctcagt tcagaagagc
     4501 cagttctact gacctggggg ttggatcatt agaagaaaag gagggtctgt tcttatagaa
     4561 agggaaatag aactggctgg ttctgttttc aaggattaga gataggaggg acagagcagt
     4621 gacagtgttg tttgccctgc tcctcatgct agtgaagttc tgaacatggg actgtatgtc
     4681 aatagcacaa gcctctaaga ccctcctgtc ttttttgggt cagagcccca gaccattgca
     4741 tcacagtcat tcggcaagag ggtccttgcg gcagacttct gttcattgca gagtgggact
     4801 cacccctgaa gaacactggt cgaaatatta tacaactgca acccttttct acttgagaca
     4861 ttgaagttca gctcaggaga cctgaagatg gggactggtg ggaaaggacc agcagacatg
     4921 taggacttct ttacatgtgt tcagtccccc acagtagcta agcacagaga ctggctttgc
     4981 tctctgtctc gtgtgtcttc ctgtaaactg ggactctaat gggatggtaa caccacgatt
     5041 cccctggttt ggtggcctaa acagtgattt ttttaaaatg tccccttttc tggatccttt
     5101 gtacacataa actcattcca tggatggctg ccttataatt ttgtgtcttt ccactttaat
     5161 tgtgaatggt ttaaaatcgc tgttttctga tttgttttat gatattaaat ttttattagc
     5221 gcatacctta aaaaaaaaaa aaaaaaa
//
