LOCUS       NM_172653               5070 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus solute carrier family 39 (zinc transporter), member 10
            (Slc39a10), transcript variant 1, mRNA.
ACCESSION   NM_172653
VERSION     NM_172653.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5070)
  AUTHORS   He,X., Ge,C., Xia,J., Xia,Z., Zhao,L., Huang,S., Wang,R., Pan,J.,
            Cheng,T., Xu,P.F., Wang,F. and Min,J.
  TITLE     The Zinc Transporter SLC39A10 Plays an Essential Role in Embryonic
            Hematopoiesis
  JOURNAL   Adv Sci (Weinh) 10 (17), e2205345 (2023)
   PUBMED   37068188
  REMARK    GeneRIF: The Zinc Transporter SLC39A10 Plays an Essential Role in
            Embryonic Hematopoiesis.
REFERENCE   3  (bases 1 to 5070)
  AUTHORS   Irfan Afridi,M., Zheng,Z., Liu,J., Liu,L., Zhang,S., Zhu,Z.,
            Peng,Y., Zhou,D. and Tu,H.
  TITLE     The bZIP transcription factor BATF3/ZIP-10 suppresses innate
            immunity by attenuating PMK-1/p38 signaling
  JOURNAL   Int Immunol 35 (4), 181-196 (2023)
   PUBMED   36409527
  REMARK    GeneRIF: The bZIP transcription factor BATF3/ZIP-10 suppresses
            innate immunity by attenuating PMK-1/p38 signaling.
REFERENCE   4  (bases 1 to 5070)
  AUTHORS   Nakata,H., Hashimoto,T. and Yoshiki,A.
  TITLE     Quick validation of genetic quality for conditional alleles in mice
  JOURNAL   Genes Cells 26 (4), 240-245 (2021)
   PUBMED   33540482
REFERENCE   5  (bases 1 to 5070)
  AUTHORS   Landry,G.M., Furrow,E., Holmes,H.L., Hirata,T., Kato,A.,
            Williams,P., Strohmaier,K., Gallo,C.J.R., Chang,M., Pandey,M.K.,
            Jiang,H., Bansal,A., Franz,M.C., Montalbetti,N., Alexander,M.P.,
            Cabrero,P., Dow,J.A.T., DeGrado,T.R. and Romero,M.F.
  TITLE     Cloning, function, and localization of human, canine, and
            Drosophila ZIP10 (SLC39A10), a Zn2+ transporter
  JOURNAL   Am J Physiol Renal Physiol 316 (2), F263-F273 (2019)
   PUBMED   30520657
REFERENCE   6  (bases 1 to 5070)
  AUTHORS   Malcuit,C., Trask,M.C., Santiago,L., Beaudoin,E., Tremblay,K.D. and
            Mager,J.
  TITLE     Identification of novel oocyte and granulosa cell markers
  JOURNAL   Gene Expr Patterns 9 (6), 404-410 (2009)
   PUBMED   19539053
REFERENCE   7  (bases 1 to 5070)
  AUTHORS   Ryu,M.S., Lichten,L.A., Liuzzi,J.P. and Cousins,R.J.
  TITLE     Zinc transporters ZnT1 (Slc30a1), Zip8 (Slc39a8), and Zip10
            (Slc39a10) in mouse red blood cells are differentially regulated
            during erythroid development and by dietary zinc deficiency
  JOURNAL   J Nutr 138 (11), 2076-2083 (2008)
   PUBMED   18936201
  REMARK    GeneRIF: The expression of Slc30a1, Slc39a8, and Slc39a10 in the
            erythrocytes of zinc deficient and replete mice is reported.
REFERENCE   8  (bases 1 to 5070)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   9  (bases 1 to 5070)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   10 (bases 1 to 5070)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116452.9 and AC124185.3.
            
            On Oct 4, 2017 this sequence version replaced NM_172653.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC062918.1, SRR11927938.3529871.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-148               AC116452.9         129244-129391       c
            149-1173            AC116452.9         110900-111924       c
            1174-1381           AC116452.9         108329-108536       c
            1382-1551           AC116452.9         103116-103285       c
            1552-1740           AC116452.9         101866-102054       c
            1741-1861           AC124185.3         3386-3506
            1862-2230           AC124185.3         4596-4964
            2231-2311           AC124185.3         5886-5966
            2312-2502           AC124185.3         11853-12043
            2503-5070           AC124185.3         13918-16485
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 24.07 cM"
     gene            1..5070
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /note="solute carrier family 39 (zinc transporter), member
                     10"
                     /db_xref="GeneID:227059"
                     /db_xref="MGI:MGI:1914515"
     exon            1..148
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            149..1173
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            1174..1381
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1551
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            1552..1740
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1861
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..2230
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            2231..2311
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            2312..2502
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..5070
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3306..3311
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /note="hexamer: AATGAA"
     polyA_site      3338
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
     regulatory      5050..5055
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /note="hexamer: AATAAA"
     polyA_site      5070
                     /gene="Slc39a10"
                     /gene_synonym="2900042E17Rik; 5430433I10; mKIAA1265;
                     Zip10"
                     /note="major polyA site"
ORIGIN      
        1 gctgagtgcg ccgtcggcgt agagcgccgg ctctcgcgct aggctccgcg acgcagatag
       61 cgcaggcggc tttggagaat acacgactgg gtgcagccgg ggtttggtac cgagcggaga
      121 ggagatgcac acggcactcg agtgtgagga aaagtagaaa tgaaggtgca tatacacaca
      181 aagttttgcc tcatctgttt actgacattt attttccatc attgcaacca ctgccatgaa
      241 gaccatgacc atggccctga ggagcttcac agacatcatc gtgggatgac agagtcagag
      301 tcaagcaaat tttcagtgca ggatgctgaa aatgaaaaaa agtactatat tgaaaaactt
      361 tttgaccgtt atggtgaaaa tggaagatta tcattttttg gtctggagaa acttttaaca
      421 aacttgggcc ttggagagat caaagtcgtt gagattaatc acgaggacct tggccatgat
      481 catgtttctc acttagacat tctggcagtg caagagggaa agcatttcca ttcgcatacc
      541 caccagcatt ttcacaatca tttaaatgca gaaaatcata ctacaaccag tgtgacatca
      601 aaaagaaacc acaaatgtga tccagagaaa gaggcagctg aactgcccat caaagctgat
      661 gataaacacc tgcatgaccg caatcaccgc ttccatcatc gccatcgttt gcatcatcac
      721 ctggatcaca acactactcg tcacgttcat aatgactccg ttgctcacag tgagcatggg
      781 gagcccggtc acagcccttc accagagacc aataaaacac aagagcagtc tgaagtgaag
      841 tcagtgaagg tcaggaggaa agaaaaaggg aagaggaaga aagaaaactc ggaggttaat
      901 acaccaggtt tcctccccaa ccatgatcac agtgaacaat atgagcataa ccgggttcac
      961 aaacttgacc gtgtacatag ccctggccat cctcatgcgc atcttcctga gcacagtggt
     1021 catgagcttg gccatggaca ccaagaactt gatcctgata atgaaggtga acttcgacat
     1081 actagaaagc gagaagcacc acatgttaga aaaagtgcaa tttattccac ccctagccac
     1141 aaagaccaga gtgaagacga ccgccagcat gaatgtttga acgtcactca gttgttaaaa
     1201 cactttggtc ttggtccgaa ctctcccatc tcaccggatc tattcacgta cctttgccct
     1261 gcattgctgt atcagatcga cagcagactt tgtattgaac attttgacaa acttttagtt
     1321 gaagatttaa ataaggataa aactctggtt cctgaagata agacaaatat aggggcatcg
     1381 gcgtggatct gtggcatcat atctatcacc gtcattagtc tgctttcctt gctgggtgtg
     1441 attttggttc ccatcatcaa ccaaggatgc ttcaaattcc ttctcacgtt ccttgttgca
     1501 ctagcagtag gaacaatgag tggagacgcc cttctgcatc tactgcccca ttctcagggt
     1561 ggacatgacc acagtcatca gcatacgcac ggacatggtc attcacatgg gcatgaatct
     1621 aaggagtttt tggaagaata tgatgctgtg ttgaaaggac ttgtggcgct aggaggcatt
     1681 tacttactgt tcatcataga acactgcatt cgaatgttta agcactacaa gcaacaaaga
     1741 ggaaaacaga aatggtttat gaagcagagc acagaagaat ccactattgg aagaaagctt
     1801 tcagatcata agttaaacag cacaccggat gctgactggc tccaactcaa gccccttgct
     1861 ggaacggatg actcggtagt ctctgaagac cggcttaatg agactgaact gacggattta
     1921 gaagcccaac aagaatcccc tcctaaaaat tacctgggtg tggaggaaga gaaaatcatg
     1981 gaccattctc acagtgatgg actgcacacc attcatgagc acgaggtcca cgtgacctca
     2041 cataaccacc atgatgagga taaagcagtg ctgaggaagc acagccacca gtggcaccac
     2101 agacacgccc atcattctca cgggccctgc cactccggct cagacctgaa ggaaacagga
     2161 atagccaata tagcctggat ggtgatcatg ggtgacggca tccacaactt cagtgacggc
     2221 ctcgccattg gggcagcttt cagcgcgggg ctgactggag gcatcagcac atccatagcc
     2281 gtcttctgtc atgaactgcc acatgaatta ggtgattttg cagttcttct aaaagcaggc
     2341 atgaccgtaa agcaagcaat tgtgtacaat ctgctctctg ccatgatggc ttacatagga
     2401 atgctcatag gcacggcagt cggtcagtat gccaacaaca tcacactctg gatcttcgca
     2461 atcactgccg gcatgttcct ctatgtggcc ttggtggata tgcttccaga aatgctgcat
     2521 ggagatggtg accatgagga gcatggcttc tgtccagttg ggcagttcat tcttcagaat
     2581 ttaggactgc tgtttggatt cgccatcatg ctggttattg ccctctatga agacaaaatt
     2641 gtgtttgaca tccagttctg accattccca gcatctctgt tgattgcgag aatgctcgtg
     2701 cagcttgcct ctgttccttg tactgtatgc acgtcgctca gagaatccag tggcctgcac
     2761 tatttacagg ttctgtagat ttgagcctaa ccacgaaaga ctggtgttca gtactgtttt
     2821 ctctgcatga atgggtcttt taaaagtttg cgataaagtc agaacatgga actccgtgta
     2881 ccaatattga tagaagttta agagaatcat ataaaacact agtcttttta ttagtagaaa
     2941 cttctgttgc tatgcagaaa tagaaattaa accaaaaaaa tcatttaaac tttaaaaata
     3001 ttttaaatgg acattgagca gacatttttg cgtgtgtgct atgaatgatt ttagtgccct
     3061 ctattcagct aaatacatac atatgggatt aatagggatc aacttgacac aactttgaaa
     3121 ctgtataaag ttgattttag gaactagagg gaagcccagg ctgcactaga gtatggattt
     3181 agcattgggg aaagccctta ttcttgaatc tagagttact atttttgtat atatttgcat
     3241 agtgttcaaa cttgcagcct aaactactga aatttgtgat tgtatgtttg tgtgaacttc
     3301 agtttaatga aagattcata atggttcttt gcatactata cttggtgttg gatttttctt
     3361 tttaactttg tttttatggg gggggtgagt cagaggatgt agtcagatac ctttttctta
     3421 acattactgc tctagaaaaa tatcaaacaa atggcattcc atttccctag tactaactag
     3481 gttaattgga aattttaagt tctgggtgtt catgttattt taccagtttg gcatttggaa
     3541 ctcggagcac atgctgtggc tggtagtaaa agccaagttt gccatgccta tagtctgtat
     3601 atagaatgtc agctaaatgc ttactgcact ggtaccatag ctactttggt accaagtata
     3661 tgactaagcc aaaatcactt ctatcatttt gtgccaagat acactgctgg tgcctgaaat
     3721 ggagcggtca gtgtttgggt gcctgctctt acaccactgg ggcagtgatg tgtgagaagt
     3781 ctaagtcacg tttcgtctga ttgtgactca taacttgtag actagtcatg tgcatacagc
     3841 tgtttacatc ccatgccacc cactcttcat ttatacaggc aaatgtctga accgtgtgca
     3901 gctagctcta ttttaactgc ttggcagcca ggatatccct tgggaaaaac cacataagag
     3961 ccaaaccctg gcctttccat tttaaatatt tttattcagt cccttctctg gttcttttcc
     4021 tcttactctg attttccttt taagacaaaa acaaaaattt gagggcaaca catgcgacca
     4081 ggtgtcagag gtcaatctcc aatatttctt tgatatgtta taagcaaggg ttatttggtc
     4141 ttacagcagt tgtctctttc tcagccctcc ttgcagtaag tggttttgca cacaagtttt
     4201 cagcactggg catgcctatg acagtcatta cttcacctca ttgcttggcc ctttgagcaa
     4261 ccttgctaaa aggtgctggt gtgctcagtg ctgtcaactt caagtgactg ggatattttg
     4321 ctttcaaaac caagatacac ttatccttca gttttgagtt tgattttcaa ggagggttgt
     4381 gcattccagc attacatctc cttcatttca aacaactgcg ggaatatact cccactctaa
     4441 aatgcttcac aaagctgtta tgcctacaat atacaaagtt ttatattctc aaacaaatgg
     4501 tattatcttt atttgctaga ttttcttagt catttcaggg ggctttaaca gttgctgcta
     4561 gtattttgat agtgttccac cagtatttag tttttacatc attctagtgt atagtttcag
     4621 gtctcattag acaatcctaa ttccactaca tttctgtttg actccaacat tccacttagc
     4681 ttgactagcc taattttaac atgcttgttg gaggtcacca atattacttg tatgatgctg
     4741 tcaccatgtg acatccataa agattttggt gtataccaca ttgcattcaa ccagctgtga
     4801 ttatgcttag aaatactata gtaactagat gcagtgtgaa ccttttccat taacagtaag
     4861 tcagtggctt caatgtgatt atggtcctgc aaggtgatac ttgctaaaat atctaaacat
     4921 ttttgttgtt gtgactgaat catttttttt taaatttata aagctggaag tgatgaaatg
     4981 ctgttttttc attgtcaaca gtggtgtgtc attttatata tgttcctaat gcttacggaa
     5041 ctctcccaaa ataaagttat tcagaaagtg
//
