LOCUS       NM_001009950            2694 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus solute carrier family 38, member 8 (Slc38a8), mRNA.
ACCESSION   NM_001009950 XM_150131
VERSION     NM_001009950.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2694)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2694)
  AUTHORS   Guardia,A., Fernandez,A., Seruggia,D., Chotard,V.,
            Sanchez-Castillo,C., Kutsyr,O., Sanchez-Saez,X., Zurita,E.,
            Cantero,M., Rebsam,A., Cuenca,N. and Montoliu,L.
  TITLE     A Slc38a8 Mouse Model of FHONDA Syndrome Faithfully Recapitulates
            the Visual Deficits of Albinism Without Pigmentation Defects
  JOURNAL   Invest Ophthalmol Vis Sci 64 (13), 32 (2023)
   PUBMED   37862028
REFERENCE   3  (bases 1 to 2694)
  AUTHORS   Liu,H., Zhu,Z., Xue,Q., Yang,F., Cao,W., Xue,Z., Liu,X. and
            Zheng,H.
  TITLE     Picornavirus infection enhances aspartate by the SLC38A8
            transporter to promote viral replication
  JOURNAL   PLoS Pathog 19 (2), e1011126 (2023)
   PUBMED   36735752
  REMARK    GeneRIF: Picornavirus infection enhances aspartate by the SLC38A8
            transporter to promote viral replication.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC140672.5 and AC166781.7.
            
            On Sep 14, 2022 this sequence version replaced NM_001009950.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089013.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-241               AC140672.5         171390-171630       c
            242-432             AC140672.5         170867-171057       c
            433-631             AC140672.5         169527-169725       c
            632-764             AC140672.5         165927-166059       c
            765-866             AC140672.5         164062-164163       c
            867-924             AC140672.5         162111-162168       c
            925-1039            AC140672.5         157172-157286       c
            1040-1187           AC140672.5         155843-155990       c
            1188-1396           AC140672.5         155316-155524       c
            1397-1448           AC140672.5         152494-152545       c
            1449-2694           AC166781.7         191-1436
FEATURES             Location/Qualifiers
     source          1..2694
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 67.8 cM"
     gene            1..2694
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /note="solute carrier family 38, member 8"
                     /db_xref="GeneID:234788"
                     /db_xref="MGI:MGI:2685433"
     exon            1..241
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            242..432
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            433..631
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            632..764
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            765..866
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            867..924
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            925..1039
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1187
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1396
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            1397..1448
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..2694
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2665..2670
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /note="hexamer: AATAAA"
     polyA_site      2694
                     /gene="Slc38a8"
                     /gene_synonym="Gm587"
                     /note="major polyA site"
ORIGIN      
        1 cccccccccc cccaaattgc aagctcttgg gacttctctg tctttgtccc tcagacttgg
       61 atattaaacc caacaaatgc ccttagggcc ccctaatgaa agtctcagga gcccagacct
      121 gtggaggaag actctacctc cacctgcctc tcatgactgc aacagtgtgg ccgaagcact
      181 aagaggaagc ctaaatttga atctgctggc ccagggcctg tgggacacct tactgggttt
      241 gccatggaag ggcagcccag agggagcaga ggccctctgg agaagcccct ccctgctgcc
      301 acccatccca ctctgtcctc actgggcgcc gtgttcatcc tcttgaagtc cgctctgggc
      361 gccggcctgc tcaacttccc ctgggccttc tacaaggcag gaggcatgct gcccaccttc
      421 ctggtggccc tggtatcttt ggtcttcctg atcagcggcc tggtcatcct gggctacgca
      481 gcatctgtca gtggccagac cacctaccag ggtgtggtcc gggagctatg tggccccgcc
      541 atggggaagc tgtgtgagat ctgcttcctg accaacctgc tcatgatctc tgtggctttc
      601 ctcagagtga tcggggacca gctggagaag ttgtgtgact ccctcctgcc tgacgcccca
      661 cagccttggt atgcagccca gaacttcacc ctgcccctga tctccatgct ggtcatcttt
      721 cccctgtcag cacttcggga aattgccctc cagaagtaca ccagcatcct aggtactctg
      781 gctgcctgct accttgctct ggtcatcacg gtgcaatact acctgtggcc ccagggcctc
      841 atacgccagc ccggtccttt gctgagcccg tctccctgga cctctgtgtt tagcgtgttc
      901 cctaccatct gctttggatt ccagtgtcat gaggccgccg tctccatcta ctgcagcatg
      961 tggaaccaga gcctctccca ctggaccctg gtttctgtgc tgtccttgct ggcctgctgc
     1021 cttgtctaca cgctgacagg ggtttatggc ttcctgacct tcgggcctga agtttctgct
     1081 gatatcttaa tgtcctaccc aggcaatgac acagccatca tcgtagcacg cgttctcttt
     1141 gcggtctcca ttgtgactgt ctaccccatt gtgctattcc tggggaggtc tgtgatgcag
     1201 gacttttgga aaaagagcta ctgggccaca cgggggcctc cagtgctggc tgacccctca
     1261 gggccttggg ttcggctgcc tctgaccttc ctgtgggtgg tggtgacgct caccatggct
     1321 ctgttcctgc cggacctcag cgagatcatt agcatcattg gtggtgtcag ttccttcttc
     1381 atcttcatct tcccaggttt gtgtctcatc tgtgctgtgg acacggaacc catgggacca
     1441 agagtcaagt gctgcctgga ggcctggggc atcctctctg tgctggtggg cactttcatc
     1501 tttgggcaga gcacagcggt ggccatggtg gagctgctct gagaggcctc tgggctgaca
     1561 caatcactcc tgcatctggc ctgaagaccc ctataaggtt cttgctgtca caaaggtgct
     1621 gccctgtcta ttgagcactg cttctcctat ggctcacggg accccggtga ggaaggacgg
     1681 ctgtgacaag ttcctgccac gtggtgactc gggacagtag aagcccatgc taccgaaagc
     1741 tggagtgtgg gctagcgagt ggtgggtcat ggtgcttcag aaggttctgg aacgttcttc
     1801 ccactgtcca ctctggtggt tgcaggaatt ccttagtgtc cctggcttgt agatgtatca
     1861 ctgtagtcac agggtggaca cctatcctgt gtgtcctttt ccaagcggaa tgcccatctc
     1921 aagttagtga gcacttgtct gcacccgcta tgtgtaaaga catgtgactt agttactgtt
     1981 ctgttgctgt gaagagacac atgatcaagg aactcagagg agttccttgg gaggttagcg
     2041 ttcatgagca tcatggcagg gagcatggtg gcaggcaggc aggcaggcat gatgctgcag
     2101 cagtagctga gccattacat tctcatgggc gagcacaagg cagagagcac acactgggaa
     2161 cgatgtggac ccactcccag tgacaagcct ccttcaacaa gaccacacct cctaatcctt
     2221 cccaaacagt tgagaccaac cattcataca tgtgaacctg tgggagccat tttcattcaa
     2281 accaccggat tccactccct ggctcccatg gagtgcaaag tgcaaactgc attcagtcca
     2341 gcttcaaaag tctccattgt tggggtctga cttaaggtta cgtgaggata aaatgcattc
     2401 gagagctaag tgtcagagca gctaacgttg ctgtttctca ggaagtaaat ttggaatgcc
     2461 cacaagtgtg ggagggacac aggaaccctt gtgaccttcc tcggtttcta gaaaacagtc
     2521 aacagcattc tcatacctca gccatttttt tttctgaaga caaataatat tgtcatgctt
     2581 catataaacc tgaacgtgcc aggctgtgag gtgggcatct ctgcaactgc caactcctaa
     2641 ctctgctatc gaaggagcta caataataaa atgagcctcg ttgtgcaaat cgca
//
