LOCUS       NM_177074               1606 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier family 38, member 11 (Slc38a11), mRNA.
ACCESSION   NM_177074
VERSION     NM_177074.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Kolesova,H., Hrabalova,P., Bohuslavova,R., Abaffy,P.,
            Fabriciova,V., Sedmera,D. and Pavlinkova,G.
  TITLE     Reprogramming of the developing heart by Hif1a-deficient
            sympathetic system and maternal diabetes exposure
  JOURNAL   Front Endocrinol (Lausanne) 15, 1344074 (2024)
   PUBMED   38505753
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 1606)
  AUTHORS   Zhang,J., Jin,H., Zhang,W., Ding,C., O'Keeffe,S., Ye,M. and
            Zuker,C.S.
  TITLE     Sour Sensing from the Tongue to the Brain
  JOURNAL   Cell 179 (2), 392-402 (2019)
   PUBMED   31543264
REFERENCE   4  (bases 1 to 1606)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ055756.1 and AK139966.1.
            
            On Sep 8, 2006 this sequence version replaced NM_177074.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK139966.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                CJ055756.1         2-52
            52-1329             AK139966.1         2-1279
            1330-1606           AK139966.1         1281-1557
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 38.47 cM"
     gene            1..1606
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /note="solute carrier family 38, member 11"
                     /db_xref="GeneID:320106"
                     /db_xref="MGI:MGI:2443383"
     exon            1..146
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1469
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /codon_start=1
                     /product="putative sodium-coupled neutral amino acid
                     transporter 11"
                     /protein_id="NP_796048.2"
                     /db_xref="CCDS:CCDS38129.1"
                     /db_xref="GeneID:320106"
                     /db_xref="MGI:MGI:2443383"
                     /translation="MSYQQPQLSGPLQRETDSSDRESLISGHEHGGKSSQSAAVFNVV
                     NSVIGSGIIGLPYSMKQAGFPLGILLLFLVSYITDFSLVLLIKGGALSGTDSYQSLVN
                     KTFGFPGYLLLSTLQFMYPFIAMISYNIITGDTLSKVFQRLPGVDPGGWFISRHFIIV
                     VSTVTCTLPLSLYRDIAKLGKISFISTILTTVILGIVMTRAISLGPNIPKTDNAWVFA
                     KPNAIQAIGVMSFAFICHHNCFLVYGSLEEPTVAKWRRIIHTSILVSVFICVLFATCG
                     YFTFTGFTQGDLFENYCRSDDLVTFGRFCYGITVILTYPIECFVTREVIANVFFGGTL
                     SSVFHTVLAVLIVTAATLVSLMIECLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPR
                     THSDKIMACVMFPVGAVVMVVGFVMAITNPQDCTHGQEMFYCFPENVSFTNTSWSHLQ
                     LTT"
     exon            147..267
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            268..342
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            343..477
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            478..543
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            544..650
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            651..730
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            731..801
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            802..963
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1076
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1208
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1606
                     /gene="Slc38a11"
                     /gene_synonym="9330158F14Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tccttccatc tcgctggcga acttaagcgg gcaaaacctg caggggagtt tggcctggtg
       61 ggagcctgct tcccagcctc agaacctgcc cttgcgcaga tgcagacatg agctatcagc
      121 agccacagct gagcggtcct ctgcagagag agacagactc gagtgacaga gaaagcctga
      181 tctccggaca tgaacacgga gggaaatcta gtcagtctgc cgctgttttc aatgtagtca
      241 attctgttat aggatctggg ataataggat tgccttattc aatgaagcaa gctggatttc
      301 ccttgggaat actgctttta ttcttggtct catacatcac agacttctcc ctagttttat
      361 tgataaaagg aggagccctc tctggaacag actcctacca gtctttggtt aacaagacct
      421 ttggctttcc cgggtacctg ctgctctcta ccctacagtt tatgtaccct ttcatagcta
      481 tgataagtta caacataata actggagata ctttgagcaa agtttttcaa agactcccag
      541 gagttgaccc tggaggttgg tttattagtc ggcacttcat tattgtggtt tcaacggtta
      601 catgtactct gccattgtca ctgtaccgag atatagcaaa gcttggaaag atctctttca
      661 tctctacaat tttaacaact gtaattcttg gaatcgtaat gacaagggcc atttccttgg
      721 gaccaaacat accaaagaca gacaatgctt gggtgtttgc aaagcccaat gccatccagg
      781 ctattggggt gatgtctttt gcgttcattt gccaccataa ctgcttccta gtctatggtt
      841 ctctcgaaga gcccacagta gcgaagtggc gccggattat ccacacatcc atcttggttt
      901 ctgtattcat ctgtgtgctc tttgcaacgt gcgggtactt cacttttact ggcttcactc
      961 aaggagactt gtttgaaaat tactgcagaa gtgatgacct ggtgaccttt gggaggtttt
     1021 gttatggtat cactgtcatt ttgacttacc cgattgaatg ctttgtgacc agagaggtaa
     1081 ttgccaatgt gttttttggt gggactcttt catcagtgtt ccacaccgtc ttagcagtgc
     1141 ttatcgttac tgcagccaca ctggtatcat tgatgattga gtgccttgga atagttttag
     1201 aactcaatgg tgtgctctgc gcggctcctt tgatttttat catcccctca gcttgctatc
     1261 tgaaattatc cgaagaacca aggacacatt ccgataagat aatggcctgt gtcatgtttc
     1321 ccgtcggggc ggtggtgatg gtggtaggct tcgtcatggc tatcacaaat cctcaggact
     1381 gcacccacgg gcaggaaatg ttctactgct ttcctgaaaa tgtctccttc acaaacacct
     1441 cctggtctca tcttcaactg acaacataac tttcaattcg gaacctcggc atctttcagc
     1501 gagctggctg ctttaaacaa catgcacctg tggttgtctc tttgtcacaa gattagcact
     1561 gatgagcatg gagacttgct tgtccttagt ctttatgcca atatgg
//
