LOCUS       NM_175675               3082 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier family 35, member F6 (Slc35f6), mRNA.
ACCESSION   NM_175675
VERSION     NM_175675.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3082)
  AUTHORS   Boonen,M., Hamer,I., Boussac,M., Delsaute,A.F., Flamion,B.,
            Garin,J. and Jadot,M.
  TITLE     Intracellular localization of p40, a protein identified in a
            preparation of lysosomal membranes
  JOURNAL   Biochem J 395 (1), 39-47 (2006)
   PUBMED   16367739
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY166812.1, AK049408.1 and AK051359.1.
            
            On May 16, 2008 this sequence version replaced NM_175675.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK051359.1, AK159707.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-366               BY166812.1         6-371
            367-3028            AK049408.1         331-2992
            3029-3082           AK051359.1         3007-3060
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 16.74 cM"
     gene            1..3082
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /note="solute carrier family 35, member F6"
                     /db_xref="GeneID:74919"
                     /db_xref="MGI:MGI:1922169"
     exon            1..160
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..1202
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /note="transmembrane protein C2orf18 homolog; ANT2-binding
                     protein; transport and Golgi organization 9 homolog"
                     /codon_start=1
                     /product="solute carrier family 35 member F6 precursor"
                     /protein_id="NP_783606.2"
                     /db_xref="CCDS:CCDS19161.1"
                     /db_xref="GeneID:74919"
                     /db_xref="MGI:MGI:1922169"
                     /translation="MAWTKYQLFLAGLMLVTGSINTLSAKWADNFVAEGCGGSQEHSF
                     KHPFVQAVGMFLGEFSCLAAFYLLKCQGRRQSASSVEPQQPFNTLLFLPPALCDMTGT
                     SIMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLDRRLAPSQWLGILITIAGLVVVGL
                     ADLLSKHDSQHKLSEVITGDLLIIMAQIIIAIQMVLEEKFVYKHNIHPLQAVGIEGFF
                     GFVILSLLLVPMFYIPTASFSGNPRGVLEDALDAFCQVGRQPLIALALLGNISSIAFF
                     NFSGISVTKELSATTRMVLDTLRTIVIWAFTLALGWEIFYPLQILGFLILLMGTALYN
                     GLHRPLLAFLSRRWRLPTQEGEQERLLGDSRTPINEAS"
     exon            161..233
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     exon            234..405
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     exon            406..618
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     exon            619..729
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     exon            730..3082
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1943..1948
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /note="hexamer: ATTAAA"
     polyA_site      1969
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /note="major polyA site"
     regulatory      3013..3018
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
                     /note="hexamer: AATAAA"
     polyA_site      3031
                     /gene="Slc35f6"
                     /gene_synonym="4930471M23Rik; 5730478O19Rik; ANT2BP; P40;
                     Tango9"
ORIGIN      
        1 ggaagttctt gagtaggaga ctccacatcc cgggtgaccc gggttggagc tgctgattca
       61 agtggtctct cgtgtccacc actatggcct ggactaagta ccagttgttc ctggccgggc
      121 ttatgctggt caccggctcc atcaacacgc tttcggcaaa gtgggccgac aactttgtag
      181 ctgagggctg tggaggaagc caggagcaca gcttcaagca tcccttcgtc caggcagtgg
      241 gcatgttcct gggagagttc tcctgccttg ctgccttcta cctgctcaaa tgccaaggca
      301 gaagacagtc agcctccagt gtagagcccc agcagccctt caacaccctg cttttcctgc
      361 ccccagccct gtgtgacatg actgggacca gcatcatgta cgtggccctg aacatgacca
      421 gtgcctcaag ctttcagatg ctgcggggtg cagtgatcat cttcacaggc ctgttctcag
      481 tggccttcct ggaccggagg ctggcaccaa gccagtggct gggcatcctg atcactattg
      541 cgggactggt ggtagttggc ctagctgacc tcctgagcaa gcatgacagt caacacaagc
      601 tcagtgaagt catcacaggt gacttgttga tcatcatggc ccagatcatc attgccatcc
      661 agatggtgct agaggagaag tttgtctaca aacacaacat ccacccactc caggcagtag
      721 gcatcgaggg cttcttcggc ttcgtgatcc tctcgctgct ccttgtgcct atgttctaca
      781 tccccacggc ctcctttagt gggaaccctc gcggggtgct ggaagacgcg ctggatgcct
      841 tctgccaagt gggccgacag cccctgattg ccctggctct gctaggcaac atcagcagca
      901 ttgccttctt caacttttcg ggcatcagcg tcaccaagga actgagtgcc accacccgca
      961 tggtgctaga caccctgcgc accatagtca tctgggcctt taccctcgca ctgggctggg
     1021 agatcttcta tccattgcag atccttggtt tcctcatcct ccttatgggc accgccctct
     1081 acaatgggct gcaccgacca ctgctagcct tcctgtccag acgctggcga ctccctaccc
     1141 aggagggaga gcaagagaga ctgctaggtg acagtcggac tcccatcaat gaagccagct
     1201 gagcccgcag tgagatctct gctgccacca gatggctgag gccatgcaga ctggtgggct
     1261 gtgggtgccc tgtccccaag gcctcacccc acccatccct aatgacccct ctgtgcggcc
     1321 gttgccagag aggatgggag gataccaggt cttgctttaa tcctgaggcc tgtaatattg
     1381 ggacccagcc cccacaggcc cagagatggc aaccactctc agcctccagt tctgctgcac
     1441 tagaacaaaa ttacgagctt gaatggcaag aattcacaac cctggtattt ctgttataca
     1501 ctaacttgtc atggtaaatt atctagccta tgaaccatac actacaaaga agtcggtgaa
     1561 caggttcaaa tcagaactaa gagactattc tgcagagttg gaagatactc ctgaagcctg
     1621 tctaaaaacc tagtttctga cccagccgtg gcttggggtg tgcaccaggt ctgactgctc
     1681 tgcagcacag gtgtgcataa tgtgtctttg gtgccttgca gccccaacat cctatggcct
     1741 ctgattgtca ctagcctgag aaaagagcag cacacctgta ccccttctcc ccatggcggg
     1801 gggggggggg ggctctttgg tatttttgtt tttagcttga ggtttttgcc attacctgtc
     1861 cctgactgtg ctgaaactca tggtgtagac caggctaacc tccaactcac agagatttag
     1921 cttctacttc ctcagtgatg gaattaaagg tgtgcatcac cacgcccaac acctccttga
     1981 tgttttgact tccttgatgt tcttcatacc ctaaggcccc tctgcctgga aaaaacaaag
     2041 ggggattcca ggcagcccag gaaatcgatt ctggagcttt tttgtttttg tttgtttgtt
     2101 ttgttttgtt ttgttttgtt tttgtctgaa gcaaaagtct tactgtgtgg taccaacatt
     2161 caacttccta tgtggcccag agctggcctt aaactcagcc ttcctgccca agtactgaga
     2221 ctataggaag gtaccaaccc gacagcagag cttcttccat tctcaaggag actgaagcct
     2281 ggagttgtac cttgtttggc aagaggggtc tgtgcttact gccagcttgg gccaaagacc
     2341 tgagaggccc ctgatacagg cagctgcata acactgtatt agagaaactc agagccagtg
     2401 tggccccgct cccaggatcc agacccatag catccacagg atgacagact tagcagatgt
     2461 cttcctcact cggtaatctg acatccccag cattaggtta aatgcttcac cctcactccc
     2521 tctcatgatg tctgcagagg caagtgcaga gggaaaaacc gccccaccca gcaggtgtga
     2581 caaattccac tactatgcag atctctgtgg gcctttgggg tggatttcta gggctgggct
     2641 aaagacctaa cacactgtta ccctgcagag gctgttaccc tgaacagaag aaatgcagtc
     2701 ggaaggagcc ttggagctct ggcagccctt aatcacagca ttgcttatga gaatggctga
     2761 gtggccactc actagtaaaa cactaacagc tttctttgtg aggggaaggg gctcttgatg
     2821 agctaagccc tcagtttaat ttgattgcaa aagattctaa agatatgtca aggaaggaag
     2881 gaactcttca attccattag tcctgagtcc ccaagacccc agcttctctg gactacaatc
     2941 tgtcacaggg agaagtaaat gtgcctcttt actcaaggtg acagagacag tgtggcagct
     3001 ggcttgtaca aaaataaaaa ctgaggccct acaatgttgt tttggaattt atttttttaa
     3061 ctaaataaaa aattggcaat at
//
