LOCUS       NM_028787               2776 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus solute carrier family 35, member F5 (Slc35f5),
            transcript variant 1, mRNA.
ACCESSION   NM_028787
VERSION     NM_028787.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Tang,T., Li,L., Tang,J., Li,Y., Lin,W.Y., Martin,F., Grant,D.,
            Solloway,M., Parker,L., Ye,W., Forrest,W., Ghilardi,N., Oravecz,T.,
            Platt,K.A., Rice,D.S., Hansen,G.M., Abuin,A., Eberhart,D.E.,
            Godowski,P., Holt,K.H., Peterson,A., Zambrowicz,B.P. and de
            Sauvage,F.J.
  TITLE     A mouse knockout library for secreted and transmembrane proteins
  JOURNAL   Nat Biotechnol 28 (7), 749-755 (2010)
   PUBMED   20562862
REFERENCE   3  (bases 1 to 2776)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ171116.1, AK145848.1 and AA038985.1.
            
            On Sep 28, 2017 this sequence version replaced NM_028787.4.
            
            Transcript Variant: This variant (1) encodes the shorter isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076339.1, AK004892.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                CJ171116.1         2-15
            15-2611             AK145848.1         2-2598
            2612-2776           AA038985.1         1-165               c
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 54.7 cM"
     gene            1..2776
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="solute carrier family 35, member F5"
                     /db_xref="GeneID:74150"
                     /db_xref="MGI:MGI:1921400"
     exon            1..283
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..1818
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="solute carrier family 35 member F5 isoform 1"
                     /protein_id="NP_083063.2"
                     /db_xref="CCDS:CCDS35694.1"
                     /db_xref="GeneID:74150"
                     /db_xref="MGI:MGI:1921400"
                     /translation="MVPPRLHRGAGRPGGLSSLPPFGLGSARFAGIAFEDLREALATR
                     LQMVYVFIMNRVNSQSSGFSQRRRMALGIVILLLVDVIWVASSELTSYVFTQYNKPFF
                     STFAKTSMFVLYLLGFIIWKPWRQQCTRGFRGKPAAFFADAEGYFAACTTDTSMSSSL
                     SEPLYVPVKFHDLPSEKLESTNIGTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLSRM
                     SYPTVKDQESILKTVGKLTATQVAKISFFFCFVWFLANLSYQEALSDTQVAIVNILSS
                     TSGLFTLILAAVFPSNSGDRFTLSKLLAVILSIGGVVLVNLSGSEKSAGRDTIGSIWS
                     LAGAMFYAVYIVMIKRKVDREDKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFEDFEF
                     PNKVVLLCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQ
                     FSWLFFAGAIPVFFSFFIVTLLCHYNNWDPVMVGVRRVFAFICRKHRIQRVPEDSEQC
                     ESLISMHSVSQEDGAT"
     exon            284..374
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            375..516
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            517..660
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            661..723
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            724..805
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            806..996
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1078
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1166
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1231
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1336
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1496
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1587
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1742
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1839
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1840..2761
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2569..2574
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2589
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="major polyA site"
     regulatory      2597..2602
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2616
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="major polyA site"
     regulatory      2633..2638
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="hexamer: TATAAA"
     polyA_site      2658
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="major polyA site"
     regulatory      2730..2735
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      2747
                     /gene="Slc35f5"
                     /gene_synonym="1300003P13Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaccggccgg gggcggggcc tgggccgcgg ccgcaatccg ggcctccagg actctcgctg
       61 ccagcgccgt ccggtggcct gggtcactcc cctccgtcgg ggccgagtgc tgtgacagcc
      121 gcggccttga gccgaggggc agcgcagctt cttaagttgg gcttgctgtg gggcacgatg
      181 ctggggtctg tgcgtgcggt gtgaggcggc ggctctgggc ggcgggccga gccggggccg
      241 ctcatggtgc cgccacgact ccatcgaggg gcaggaaggc caggtgggct gagttcttta
      301 cctccatttg gactgggctc tgcccgcttt gcaggcattg catttgagga tctcagagaa
      361 gcccttgcaa caagactgca aatggtttat gtgtttatca tgaaccgtgt gaattcccag
      421 agcagtggtt tcagtcagcg caggcgaatg gccctgggga tagtgattct cctgctggtt
      481 gatgtgatat gggtggcatc ctcagaactc acctcgtatg tcttcacgca gtacaacaag
      541 ccattcttca gcacctttgc gaaaacatcc atgtttgttc tgtacctttt gggcttcatt
      601 atttggaagc cttggaggca acagtgtaca agaggattta gagggaagcc tgctgctttt
      661 tttgcagatg ctgaaggtta ctttgctgcg tgcacaacag atacaagcat gagtagttct
      721 ttgagtgaac ctctttatgt tcctgtgaag tttcatgatc tcccaagtga gaagctcgag
      781 agcacaaaca ttgggaccga aaagactccc aagaagtccc gtgtaaggtt cagcaatatc
      841 atggagattc gccagctccc atcgagccat gcgttagagg ccaagctctc tcggatgtct
      901 tatcccactg tgaaagacca agaatccata ctgaagactg tagggaaatt gactgcaacc
      961 caagtagcaa aaattagctt ttttttttgc tttgtgtggt ttttggcaaa tttgtcatac
     1021 caagaagcac tttcagacac acaggttgcc atagtgaata ttttgtcttc aacttctgga
     1081 ctttttactt taatccttgc agctgtattt ccgagtaaca gcggagacag gtttaccctc
     1141 tctaaactat tagctgtaat tttaagcatt ggaggtgtgg tgctggtgaa cctgtctggg
     1201 tctgaaaagt ctgctggaag agacacaata ggttccattt ggtcccttgc tggagctatg
     1261 ttctatgctg tctacattgt gatgatcaag agaaaggtag acagagaaga taaattggat
     1321 attccaatgt tctttggttt tgtaggtctg tttaatctgc tgctcctatg gccagggttc
     1381 ttcttactgc attatactgg ctttgaggac tttgagtttc ccaacaaagt ggtactgttg
     1441 tgtatcatta tcaacggcct catcggaaca gttctgtccg agtttctgtg gttatggggc
     1501 tgctttctta cctcgtcgtt gataggcaca cttgcactaa gccttacgat acctctctcc
     1561 atcatagccg acatgtgcat gcaaaaggtg cagttttctt ggttattttt tgcaggcgct
     1621 atccctgtat ttttttcatt ttttattgtt actctcctgt gccattataa taattgggat
     1681 cctgtgatgg taggagtcag aagagttttt gcctttatat gcagaaaaca tcgaattcag
     1741 agagttccag aagacagtga acagtgcgag agcctcattt ctatgcacag cgtttctcaa
     1801 gaggatggag ctacttagct gctgtggtct gcagtccagc ttaatggaac attgtacagt
     1861 gaagagacga cctggcaagt tctttgtaga cgtgtttcag tgcctcgtct gaacaggagc
     1921 cgtttcactt ctttgaaact ctacattttc cacacgtctg cttcattttc aaaatgaagg
     1981 atgtttcccg taggttttgt gcagtccagt tgccctaaag gaccaacctg ccttacgtat
     2041 cagtttagtt cctgaaatca gtggaactat tcaagggacg gaactcctct ggagactctg
     2101 tttaaacata cttttcagtt cccgagagac cacctaagta agatgacatt tctgacaggc
     2161 gggtgccagt ctgcactgcc cgcagtgagt gcaggttctg tttttgagtt tggtagtttg
     2221 caaagtgagt acactgaaga aacgttagtt agtggggcaa tacattcatg caaggttggt
     2281 ggcgccttag agatgggcga gtgtctgaga agacctgctc ggagcacact gcactctttg
     2341 atcctccctg gtgtctggtg ccttctatct taaaaaacat gacaagtcat aacagtttta
     2401 aagggaagac ttgtaaactg gaaaatcatg tatttctaaa ggctgtgtac ctataaatta
     2461 gttgagaaag ctctgtttca tttagagttt taaaggaata ttctctcttc aattaaggaa
     2521 ttttcataat ggaatggttt aaattgaagt gataaagaat attattagaa taaaatgttt
     2581 gtatatgtat ttgtgtatta aagatgtatt gagtaatttt gtatttttta catataaatg
     2641 tgctaaatta ctctaaaact gggtgctgct tccttaagta atcttacttt tcctaagtaa
     2701 atttaaatgc ttaaaataaa aaaaaaaaaa agaaaggcaa ggaaaaactc tgcttaagcg
     2761 aaaaaaaaaa aaaaaa
//
