LOCUS       NM_001356276            4415 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Mus musculus solute carrier family 35 (UDP-glucuronic
            acid/UDP-N-acetylgalactosamine dual transporter), member D1
            (Slc35d1), transcript variant 1, mRNA.
ACCESSION   NM_001356276 XM_006503080
VERSION     NM_001356276.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4415)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   3  (bases 1 to 4415)
  AUTHORS   Hiraoka,S., Furuichi,T., Nishimura,G., Shibata,S., Yanagishita,M.,
            Rimoin,D.L., Superti-Furga,A., Nikkels,P.G., Ogawa,M.,
            Katsuyama,K., Toyoda,H., Kinoshita-Toyoda,A., Ishida,N., Isono,K.,
            Sanai,Y., Cohn,D.H., Koseki,H. and Ikegawa,S.
  TITLE     Nucleotide-sugar transporter SLC35D1 is critical to chondroitin
            sulfate synthesis in cartilage and skeletal development in mouse
            and human
  JOURNAL   Nat Med 13 (11), 1363-1367 (2007)
   PUBMED   17952091
  REMARK    GeneRIF: Deficient mice develop a lethal form of skeletal dysplasia
            with severe shortening of limbs and facial structures.
REFERENCE   4  (bases 1 to 4415)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
REFERENCE   5  (bases 1 to 4415)
  AUTHORS   Muraoka,M., Kawakita,M. and Ishida,N.
  TITLE     Molecular characterization of human UDP-glucuronic
            acid/UDP-N-acetylgalactosamine transporter, a novel nucleotide
            sugar transporter with dual substrate specificity
  JOURNAL   FEBS Lett 495 (1-2), 87-93 (2001)
   PUBMED   11322953
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK140305.1, AK049180.1, BY782314.1, AK049462.1 and CO039020.1.
            
            On Sep 28, 2017 this sequence version replaced XM_006503080.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK220330.1, AK049462.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-360               AK140305.1         1-360
            361-379             AK049180.1         70-88
            380-656             BY782314.1         1-277
            657-4394            AK049462.1         285-4022
            4395-4415           CO039020.1         1-21                c
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 47.43 cM"
     gene            1..4415
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /note="solute carrier family 35 (UDP-glucuronic
                     acid/UDP-N-acetylgalactosamine dual transporter), member
                     D1"
                     /db_xref="GeneID:242585"
                     /db_xref="MGI:MGI:2140361"
     exon            1..513
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     CDS             311..1378
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UDP-GlcA/UDP-GalNAc transporter; solute carrier family 35
                     member D1; UDP-glucuronic acid/UDP-N-acetylgalactosamine
                     transporter; UDP-galactose transporter-related protein 7;
                     nucleotide sugar transporter SLC35D1"
                     /codon_start=1
                     /product="nucleotide sugar transporter SLC35D1 isoform 1"
                     /protein_id="NP_001343205.1"
                     /db_xref="GeneID:242585"
                     /db_xref="MGI:MGI:2140361"
                     /translation="MAEVHRRQHAPVKGEAPAKSSTHRDEEELGMAPAETLTVFLKLL
                     AAGFYGVSSFLIVVVNKSVLTNYRFPSSLCVGLGQMVATVAVLWVGKTLRVVKFPDFD
                     RNVPRKTFPLPLLYFGNQITGLFSTKKLNLPMFTVLRRFSILFTMFAEGALLKKTFSW
                     GIKMTVFAMIIGAFVAASSDLAFDLEGYVFILINDVLTAANGAYVKQKLDSKELGKYG
                     LLYYNALFMILPTLAIAYFTGDAQKAMEFEGWADTLFLLQFTLSCVMGFILMYATVLC
                     TQYNSALTTTIVGCIKNILITYIGMVFGGDYIFTWTNFIGLNISIAGSLVYSYITFTE
                     EQLSKQSEASNKLDTKGKGAV"
     exon            514..547
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            548..634
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            635..702
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            703..774
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            775..843
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            844..946
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            947..1039
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1107
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1186
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1269
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..4401
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4380..4385
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /note="hexamer: AATAAA"
     polyA_site      4401
                     /gene="Slc35d1"
                     /gene_synonym="C330011J09; mKIAA0260; UGTREL7"
                     /note="major polyA site"
ORIGIN      
        1 gggcagcaca acccgcgaag ccctgccgcg agccgccggg tccttcccga gcctccgccg
       61 ccacgctagg cccgcaatcg cggagccccg gagctcaggg cccgcgcccc gcaccgccag
      121 gcccgctccc gcagccgggg tcccgccacg ccaggcccgc gctcctccgc gccccgcacc
      181 gccaagcccg ctcggcaccg cgctccgcac cgccaggccc agacccccgc cgccgcgccg
      241 ctccgccgcc ccgctcgctc gcaggcccgt tgcggcagcc accgccaccg ccgccggcgc
      301 caccgccgcc atggcggaag tccacagacg tcagcatgct ccggttaaag gagaagcccc
      361 cgcgaaatcc tccacacaca gagatgagga ggagctgggg atggcgccgg ccgaaacgct
      421 aacggtgttc ctgaagctgc tggccgccgg tttctacggc gtgagctcct tcctcatcgt
      481 ggtggtcaac aagagcgtgc tcaccaacta cagatttcca tcctcgctat gtgttggact
      541 tggccagatg gtggccacgg tagcggttct ctgggtggga aagacactca gagtagtcaa
      601 gtttcctgac ttcgacagaa atgtacctcg aaagacgttt ccactacctc tactatattt
      661 tgggaaccaa atcacgggac tgttcagcac aaagaaactg aacctgccca tgtttacagt
      721 tctgagaagg ttctccattc tgtttacaat gtttgctgaa ggcgctctac tcaagaagac
      781 tttctcctgg ggtattaaga tgactgtatt tgcaatgatc atcggagcct tcgtagctgc
      841 cagctctgac ttggcctttg atctggaagg atatgttttt attttgatca atgatgtcct
      901 gacagcagca aatggtgcat acgtgaaaca gaagttagat tcaaaagagc tgggaaagta
      961 tggcctgctc tattacaatg cactgttcat gattctgccc accctggcca ttgcgtattt
     1021 cacaggagat gcacaaaagg caatggagtt tgagggctgg gctgacaccc tgttcctgct
     1081 gcagttcacc ctctcctgtg tgatggggtt catcttgatg tatgctacag tactctgtac
     1141 tcaatataac tctgctctta ccacaacgat agttggctgc attaagaata tattaataac
     1201 ttatattgga atggtctttg gtggagatta tattttcaca tggacaaatt ttatcggcct
     1261 aaatatcagt attgctggaa gcctggtgta ctcttacatc actttcacgg aagagcagct
     1321 gagcaagcag tcagaggcca gtaacaagct ggacacgaag ggaaaaggag cagtgtgacc
     1381 tccgcagccc ggaagacact ggagcctcct gattgcgggg agtcaatgtt cctttgcaat
     1441 tatacaaccc tgggattgac tgctgccttt ggaaatttat tgactgtatg ctaactgtgt
     1501 ttgaattaat ttatatcaga ctggaaaatg tactgggtgg gttttaattt atttttttcc
     1561 tctgacagtg aagcatcagt gttttgaaat cctttactct atagcttgct atctgggtgg
     1621 ccctggcagt gtatacaatg tgttccagct agagctgcct tccagtgggc tgtctctgga
     1681 aactagctgg aaatgcagct gaggatctga aatttctttt ttcttttctt ttcttttctt
     1741 tcttttcttt tcttttcttt cttttctttt cttttctttt ctttctttct ttctttcttt
     1801 ctttctttct ttcttcttct tcctcctcct cctccttctt cttctcctcc tcctcttcct
     1861 ccttctcttc ctcctccttc tcttcctcct ccttctcttc ctcctctttc tcctcctcct
     1921 tctccttctt tctccttctg cttctttctc ttcctcttcc tcctcttcta ttttgttctt
     1981 ccttccattt ccttccccca cctttttaat tgcactgtct tcatagtatc acatttgcca
     2041 aaggtggcag ctttggcact aaaagccctg agaagtgttt tgctttccta gactgtgggg
     2101 tgagcagagt gtgcctggga atgtctgctt cctctttgtt cagctggaga caagcaaggg
     2161 tggaagaagc cagccattca ctcactcgtt cagctggagt gcagtgaaag tccctcgcag
     2221 gcactgtgct gagtgctgga atacagagat ccattggtaa tggtcctgct ctagactgaa
     2281 tggaaaatgg aaaacgtggt tctctgtcca actggaaaaa tccgagactg tgcaccagtt
     2341 acttcagctc tttggacctg caggtctatg agattagaag cccctgctct gcctacccca
     2401 cgccatgagt ccagagccca caagagactg aacagctata ttttgtacac cagcatagca
     2461 gtggctcagc ctaacccttt tcttaaaggg acaatcaagg cagctgccac cccgtcccca
     2521 tgccttcatc atgtggatgt agttgctgct ctttgtatcc ctgtttgcag gtcctcattt
     2581 ccacacaaag gcctacattt ctgaactgat tggtgtgagg gaagagctag gtgggcatct
     2641 ttccattatt ggaacttggt cttttcttgg aaggatctaa gtccctctcc ctgaagtgat
     2701 gtgaggtcag ctctcaccta cagatacgtc tacctgatga gcatctcaga atggatatat
     2761 ctcctttcct cattctgaga gagcctgtgt gagtggacat tgactgaact gccttaggga
     2821 ggagtgattg ccagagctgg gtggcatggc tctgaagcat cgctggcttt ggaggggctt
     2881 gcttgggcca gcatgattgc tagggaagga gcttgcttct gcttccttgg tgcttagctg
     2941 actgcaggtc tggagcttgt atttttttgt gtctcagtgg ggaataggag agttttgatt
     3001 ttttcccccc cctctatttg aaaattttca tctttaggct ctatcttgca tataaatttt
     3061 gtaagaagga catttgttaa gttttctgtg atcttgtatc agaaatatgt gggaggtttt
     3121 ggtcagtaat gccaagacag gctctccatg gagtgttagt gggtcacagg gccactgagg
     3181 gctttaggtc tggcctttgc tttccatatt gagggctctt agtgaccagc acattgttaa
     3241 ccacatggac agatagaggg ggcagagcct ggaactctca agtgtagtcc tcagccagag
     3301 tcggacctta gttgaaagga cacaaatgaa agaagaaaaa aaaggaaaag aaaagagtca
     3361 gcgatttgta agtaagacct acctgcactg attttaggcc caccccaaaa gaacaaggct
     3421 tccattcaga ggccatggtc ctcatatttt cttctagctc agatgagcca cacagctctt
     3481 agaactgtct tccccgagtc cttctctggc aatgatgctc tttcttccca cgtctgtgcc
     3541 atgctgcttt ctcccacagg ctataatgga actttccttc cctggggaaa aaatactgag
     3601 aatgagtgca gtggatactg aatatggaac ccagtgcaca cagcgctcag cagacacagg
     3661 tctgccatcc ttccttcagt gccagcagca tagggcacca tgttttccaa gactcatgaa
     3721 actgcttctt gccttcagat gcttaggcaa cagactctgt cccttatctt tttgaaaata
     3781 caaaacaaaa atagtctctg tataattata gccactgtta ttctgctttt taaaaagaga
     3841 attattttca tattatggtg gcaaatatga aaaagggaaa tctgttttct gtctcagtgg
     3901 gagtccgttg catttcagta tggtagctca gtgaagactc agctgtcacc ctgaggtagc
     3961 tcccaggcct tcatccctca cctcagagcg aaacactgga tccagcccct ttgtcaccat
     4021 cacttttcta ggcctgcctt ctgctcctgc tgttcgcagt tcacctgtag gatgcagaga
     4081 ctctctagtg tcttgttttt aacttttacg ttgaatatat ttttaaaaaa gaaatctact
     4141 ggttagattt tatcttctca cagaatgttt ttagagatta ttttgttcac agatgtttcc
     4201 tttctcatgc tgacgagcga cctttgccta caggtgttcg cctctcacac gtcttttcaa
     4261 tatagactct atttaccaat ttacttagtg tttttaagag gtactgagca ttgaggtatg
     4321 taaatcaggt gacataaaca tggaaaatga tgtgcctaac tattttttta atgatgtcaa
     4381 ataaatactt tttctggaaa aaaaaaaaaa aaaaa
//
