LOCUS       NM_016752               1311 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus solute carrier family 35, member B1 (Slc35b1),
            transcript variant 1, mRNA.
ACCESSION   NM_016752
VERSION     NM_016752.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Willnow,T., Antignac,C., Brandli,A., Christensen,E., Cox,R.,
            Davidson,D., Davies,J., Devuyst,O., Eichele,G., Hastie,N.,
            Verroust,P., Schedl,A. and Meij,I.
  TITLE     The European renal genome project: an integrated approach towards
            understanding the genetics of kidney development and disease
  JOURNAL   Organogenesis 2 (2), 42-47 (2005)
   PUBMED   19521566
REFERENCE   2  (bases 1 to 1311)
  AUTHORS   McClive,P.J., Hurley,T.M., Sarraj,M.A., van den Bergen,J.A. and
            Sinclair,A.H.
  TITLE     Subtractive hybridisation screen identifies sexually dimorphic gene
            expression in the embryonic mouse gonad
  JOURNAL   Genesis 37 (2), 84-90 (2003)
   PUBMED   14595844
REFERENCE   3  (bases 1 to 1311)
  AUTHORS   Mohlke,K.L., Purkayastha,A.A., Westrick,R.J. and Ginsburg,D.
  TITLE     Comparative mapping of distal murine chromosome 11 and human
            17q21.3 in a region containing a modifying locus for murine plasma
            von Willebrand factor level
  JOURNAL   Genomics 54 (1), 19-30 (1998)
   PUBMED   9806826
REFERENCE   4  (bases 1 to 1311)
  AUTHORS   Ishida,N., Miura,N., Yoshioka,S. and Kawakita,M.
  TITLE     Molecular cloning and characterization of a novel isoform of the
            human UDP-galactose transporter, and of related complementary DNAs
            belonging to the nucleotide-sugar transporter gene family
  JOURNAL   J Biochem 120 (6), 1074-1078 (1996)
   PUBMED   9010752
REFERENCE   5  (bases 1 to 1311)
  AUTHORS   Lennon,G., Auffray,C., Polymeropoulos,M. and Soares,M.B.
  TITLE     The I.M.A.G.E. Consortium: an integrated molecular analysis of
            genomes and their expression
  JOURNAL   Genomics 33 (1), 151-152 (1996)
   PUBMED   8617505
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662875.14.
            
            On Jan 16, 2023 this sequence version replaced NM_016752.3.
            
            CCDS Note: The coding region has been updated to scale back the
            N-terminus to one that is more supported by the available
            transcript data and by conservation across mammals.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK160124.1, D87990.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               AL662875.14        12709-12918
            211-314             AL662875.14        13606-13709
            315-445             AL662875.14        14291-14421
            446-476             AL662875.14        15016-15046
            477-634             AL662875.14        15575-15732
            635-761             AL662875.14        16885-17011
            762-868             AL662875.14        18083-18189
            869-1022            AL662875.14        18330-18483
            1023-1311           AL662875.14        19293-19581
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 59.01 cM"
     gene            1..1311
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="solute carrier family 35, member B1"
                     /db_xref="GeneID:110172"
                     /db_xref="MGI:MGI:1343133"
     exon            1..210
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..1075
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UDP-galactose translocator 2; UDP-galactose
                     transporter-related protein 1; ATP/ADP exchanger ER;
                     endoplasmic reticulum ATP/ADP translocase"
                     /codon_start=1
                     /product="solute carrier family 35 member B1 isoform 1"
                     /protein_id="NP_058032.3"
                     /db_xref="CCDS:CCDS25277.1"
                     /db_xref="GeneID:110172"
                     /db_xref="MGI:MGI:1343133"
                     /translation="MAASRSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGP
                     KQETFTFALTLVFIQCVINAMFAKILIQFFDTARVDRTRTWLYAACSVSYVGAMVSSN
                     SALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKPKK
                     VVGIEEHTVGFGELLLLMSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTFLLGA
                     GILFTGELWEFLSFAERYPTIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTR
                     KFFTILASVILFANPISSMQWVGTVLVFLGLGLDAKFGKGTKKTSH"
     exon            211..314
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            315..445
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            446..476
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            477..634
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            635..761
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            762..868
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            869..1022
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1311
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1285..1290
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="hexamer: AATAAA"
     regulatory      1294..1299
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="hexamer: AAGAAA"
     polyA_site      1304
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="major polyA site"
     polyA_site      1311
                     /gene="Slc35b1"
                     /gene_synonym="AXER; Ugalt2; UGTrel1"
                     /note="major polyA site"
ORIGIN      
        1 gaggtccctg ccgccggccg gcgatgtccg cctggagctt tcgccttcgc cgccggtacc
       61 gctacctgct ctgaacggat cttcggccga ctcgtccgtg cgtctcatgg ccgctagtag
      121 atccctggtg cctgatcggc tgcgcctgcc gctctgcttc ttgggtgtct ttgtctgcta
      181 tttctactat gggatcctgc aggagaagat cacaagaggg aagtatggag aaggacccaa
      241 acaggagaca ttcacctttg ccttaacttt ggttttcatc cagtgtgtga tcaatgctat
      301 gtttgccaag atcttgatcc agttttttga cactgccagg gtggatcgca ctcggacctg
      361 gctctatgct gcctgttctg tctcctatgt gggtgccatg gtctccagca actcagccct
      421 gcagtttgtc aactatccaa ctcaggttct cggtaaatcc tgcaagccaa tcccagttat
      481 gctcctggga gtgacgctct tgaagaagaa gtacccgctg gccaagtacc tgtgtgtatt
      541 gctaattgtg gctggcgtgg ctcttttcat gtataagccc aagaaggtgg ttggaataga
      601 agagcacact gttggctttg gagagcttct tctgctcatg tctctgaccc tggatggact
      661 gacaggtgtt tcccaggacc atatgcgggc tcattaccaa acaggttcca accacatgat
      721 gttgaacatc aacctttggt ccacgttctt gcttggtgct gggatcctgt ttactgggga
      781 gctctgggag ttcttgagct tcgccgagag gtacccgacc atcatctata acatcctgct
      841 ctttggcctg accagtgcct tgggtcagag ctttatcttc atgacagtcg tgtacttcgg
      901 tcccctgacc tgctccatca tcaccacaac ccggaagttc ttcaccatct tggcttctgt
      961 gatcctcttt gccaacccca tcagctccat gcagtgggtg ggcaccgtgc tggttttcct
     1021 gggtctcggt cttgatgcca agtttgggaa aggaacaaag aagacctccc actaggaaga
     1081 aagaggcttc ctctactcca gaaacactta aattattatc tcgaacagtg gcatcttggg
     1141 aaaatggact cgggtcatga taagggattg ggttccaatc tttttataaa aaaaaaaaaa
     1201 aaaatcaaag gaagcaagat ggaatattct aaacaaagtg cttagggttt aacaagatgt
     1261 gttgctaatt tctgattttg cacaaataaa gagaagaaag gcaagctgga a
//
