LOCUS       NM_001007570            3181 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier family 25, member 42 (Slc25a42), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_001007570 XM_134226
VERSION     NM_001007570.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3181)
  AUTHORS   Xue,L., Schnacke,P., Frei,M.S., Koch,B., Hiblot,J., Wombacher,R.,
            Fabritz,S. and Johnsson,K.
  TITLE     Probing coenzyme A homeostasis with semisynthetic biosensors
  JOURNAL   Nat Chem Biol 19 (3), 346-355 (2023)
   PUBMED   36316571
REFERENCE   3  (bases 1 to 3181)
  AUTHORS   Fiermonte,G., Paradies,E., Todisco,S., Marobbio,C.M. and
            Palmieri,F.
  TITLE     A novel member of solute carrier family 25 (SLC25A42) is a
            transporter of coenzyme A and adenosine 3',5'-diphosphate in human
            mitochondria
  JOURNAL   J Biol Chem 284 (27), 18152-18159 (2009)
   PUBMED   19429682
REFERENCE   4  (bases 1 to 3181)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY242199.1, AC124327.9 and BE630284.1.
            
            On Oct 4, 2007 this sequence version replaced NM_001007570.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422600.2137006.1,
                                           SRR9219382.230455.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-449               BY242199.1         1-449
            450-466             AC124327.9         49130-49146         c
            467-583             AC124327.9         48552-48668         c
            584-735             AC124327.9         48019-48170         c
            736-2778            AC124327.9         44453-46495         c
            2779-3181           BE630284.1         1-403               c
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.15 cM"
     gene            1..3181
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /note="solute carrier family 25, member 42"
                     /db_xref="GeneID:73095"
                     /db_xref="MGI:MGI:1920345"
     exon            1..54
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            55..167
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..1043
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /codon_start=1
                     /product="mitochondrial coenzyme A transporter SLC25A42"
                     /protein_id="NP_001007571.1"
                     /db_xref="CCDS:CCDS40370.1"
                     /db_xref="GeneID:73095"
                     /db_xref="MGI:MGI:1920345"
                     /translation="MGNGVQEGSVRLREDAEAVLAGAVSSKRDHRQVLSSLLSGALAG
                     ALAKTAVAPLDRTKIIFQVSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIP
                     YAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMA
                     VTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREY
                     SGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTGHQHGSILSTLRSIVR
                     EEGAVRGLYKGLSMNWLKGPIAVGISFTTFDLMQILLRRLQS"
     exon            168..273
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            274..299
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            300..466
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            467..583
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            584..735
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            736..3172
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3155..3160
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3172
                     /gene="Slc25a42"
                     /gene_synonym="2900084M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 agcggctgag gcggctgagg cagtagcggc agcagcggcg acgcgtccgg gcaggactga
       61 gcctcccgct gtccagcacg cctgggatgg gtaatggtgt gcaggaaggc tcggtgcgcc
      121 tgcgagagga tgctgaagcc gtcctggctg gggccgtctc ctcgaagaga gaccacaggc
      181 aagtgctcag ctccctgctg tctggagccc tggctggtgc acttgccaag acagcagtag
      241 cccccctgga ccggaccaag atcatcttcc aagtgtcttc aaaaagattt tctgccaagg
      301 aggccttccg gctcctctac ttcacctacc tcaatgaggg cttcctcagc ctttggcgtg
      361 ggaactcagc caccatggtg cgagtgattc cttatgcagc catccagttc agcgcacacg
      421 aagaatacaa gcgcatcctg ggccactact atggctttcg tggagaagcc ctgcccccat
      481 ggccacgcct cctggctggc gccttggcag gaaccactgc ggcttccctc acgtaccctt
      541 tggacctggt tagagcaagg atggctgtga cgcctaagga aatgtacagc aacatctttc
      601 atgtcttcat ccgaatctcg agagaggaag gactgaagac cctctatttc gggttcaccc
      661 ccactgtgct gggtgtcatt ccctatgcgg gactcagctt cttcacgtac gagtcactga
      721 agagcctgca ccgagagtac agtggccgcc cgcagcccta cccctttgag cgcatggtct
      781 tcggggcctg tgctggcctt atcgggcaat cggcctccta ccctctggac gtggtgcggc
      841 ggcgcatgca gacagcaggt gtcacgggcc accagcacgg ctccatcctg agcacactac
      901 gctccattgt acgtgaggag ggcgcggtgc ggggcctcta caagggcctg agcatgaact
      961 ggctgaaggg cccaattgcc gtggggatca gcttcaccac tttcgacctc atgcagatcc
     1021 tgctgcgccg gctgcagagc taggctaaca caacagtgga tggtgagctg ttcgagcagg
     1081 ggcatgcagc tgtgtgctcg cagccctgtg gtaccttgag ggtgggcagg aggacgggac
     1141 ctgacttggg gctgtagggc ccatagcgaa gtgctggtcc tcagggtgtg acattgtgat
     1201 gatggatctt ggctgtcccc tcccttcagt tccttgctat tggctggtga gtctcctgag
     1261 gtgttaccca aaggccccta atgggtcaat tgcacttcct ggccctgtgt cctctgacct
     1321 gctgctgatc tagtgcccat tggcacccgg ggctcagagc ccatcccttc ttgctatgac
     1381 cgtgcctggc ctgcagatgt gatagcaatt ccttttaagc cacacactgg agggtcacag
     1441 tttgctcagt ggtggctata cctgtgttcc tcaatcctcc accatgcctg cctatcctct
     1501 cccaggtgac aaatggctgc tcttgcccac atagctttct ccccagagca ctgtgcccat
     1561 cctatttccg agggctgcac ctgaccattg ccaactacct ggcttgtacc tttccaggag
     1621 gccctatggc caccagacag gggtgtcaag ttcagacccc actggaaatg cccatgtggg
     1681 tatcactgat ctggggtgtc ttccaaagta caccaatcag gccgaatgca ggcccaaagc
     1741 ttcttatatg cacagcatcc atggaggtag ggctcaagct cttgaaactg ccttctgtgg
     1801 ctgtcatcta gccaggccac atgaagccca aagatgggtg ggtggctttt cctgtgtgaa
     1861 tgagtacaga tgtatccatg acctggggag cagggaaagg ctggggtatc cagggaccac
     1921 cagccagctg acacaaggag aaccccccca cacactgggt tccctaggtg tcacaggaaa
     1981 ctcttgcctt tcctggtgtc tggggttctt gatttagggt ctttgagaca gtcctagcca
     2041 gaagccctgg ctgtcctgct tctgagtgtt atctgggcta gccttcaact tagagcagcc
     2101 ctcctgcctt tactctcttt tcttttcttt ttttttcttt ctctcccttc cttcctctct
     2161 ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct ctctctctct
     2221 gtctctctct ctctctctgt ctctgtctct ctctctgtct ctgtctctct ctctctgtct
     2281 ctctctctct ctctcatttt attttcccga gacagggttt ctgtatagcc ctggctgtcc
     2341 tggaactcac tctgtagacc aggctggcct caaactcaga aatctacctg cctctgcctc
     2401 ccaagtgctg ggattaaagg cgtgcgccac cactgcccca cctaccttta gtttctagtt
     2461 ttcaacttat cctgccccag gtctgcacat aaaaccccta cccttcctat gcaatgtggc
     2521 tctggctcag aggtgatctg ggtgttgatt cccacagctg gatggcagcc atctcacatg
     2581 caggacctga gcagggtggc tcgagccctg ggcatttgca attcttgctg cagtctttgt
     2641 tcattctata tttcttacct tgtgcctgtg acgcttggcc atctctcagc ctccgcggat
     2701 agtgatgggc catccccacc atgtccccag acaccccccc cccccggcag cctctggtgg
     2761 ctgagaggga ctgtcctctc gtgagtgtac tgccactccc ttccccacct gggatggaga
     2821 gtctaggcat cccttaccag gaggccggag gtgactgagg ctcctgggtc acctcagcag
     2881 gttgcaccat gtagatggtt ggcttgagcc ctgcatcagg caaccagcag ggcaggagaa
     2941 gtgagggtgt cctgggtccc tgatcttctt gcttccccat atccccccag tagctctgtg
     3001 gctgccctcc cccatggtca ctgtccagta gctctgtggc tgccctcctc cgtggtcact
     3061 gtccagtctg gagttctatt ttgatgccat aaagacactt tgtttatata taatgtttat
     3121 atattttgaa gatttgtgcc aacagagtat atttaataaa attttaaata tcaaaaaaaa
     3181 a
//
