LOCUS       NM_175333               1226 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus solute carrier family 25, member 41 (Slc25a41),
            transcript variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_175333
VERSION     NM_175333.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Oyama,Y., Miyata,H., Shimada,K., Fujihara,Y., Tokuhiro,K.,
            Garcia,T.X., Matzuk,M.M. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated genome editing reveals 12 testis-enriched
            genes dispensable for male fertility in mice
  JOURNAL   Asian J Androl 24 (3), 266-272 (2022)
   PUBMED   34290169
REFERENCE   2  (bases 1 to 1226)
  AUTHORS   Street,V.A., Kujawa,S.G., Manichaikul,A., Broman,K.W.,
            Kallman,J.C., Shilling,D.J., Iwata,A.J., Robinson,L.C.,
            Robbins,C.A., Li,J., Liberman,M.C. and Tempel,B.L.
  TITLE     Resistance to noise-induced hearing loss in 129S6 and MOLF mice:
            identification of independent, overlapping, and interacting
            chromosomal regions
  JOURNAL   J Assoc Res Otolaryngol 15 (5), 721-738 (2014)
   PUBMED   24952082
REFERENCE   3  (bases 1 to 1226)
  AUTHORS   Traba,J., Satrustegui,J. and del Arco,A.
  TITLE     Characterization of SCaMC-3-like/slc25a41, a novel
            calcium-independent mitochondrial ATP-Mg/Pi carrier
  JOURNAL   Biochem J 418 (1), 125-133 (2009)
   PUBMED   18928449
  REMARK    GeneRIF: mouse SCaMC-3L shows a limited expression pattern; it is
            preferentially expressed in testis and, at lower levels, in brain
REFERENCE   4  (bases 1 to 1226)
  AUTHORS   Haitina,T., Lindblom,J., Renstrom,T. and Fredriksson,R.
  TITLE     Fourteen novel human members of mitochondrial solute carrier family
            25 (SLC25) widely expressed in the central nervous system
  JOURNAL   Genomics 88 (6), 779-790 (2006)
   PUBMED   16949250
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK077111.1 and BX637138.1.
            
            On Apr 6, 2007 this sequence version replaced NM_175333.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK077111.1, BC115589.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1225              AK077111.1         2-1226
            1226-1226           BX637138.1         3-3                 c
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 29.63 cM"
     gene            1..1226
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /note="solute carrier family 25, member 41"
                     /db_xref="GeneID:103775"
                     /db_xref="MGI:MGI:2144215"
     exon            1..81
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..1002
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /note="isoform 1 is encoded by transcript variant 1;
                     mitochondrial ATP-Mg/Pi carrier protein; SCaMC-3-like;
                     mitochondrial ATP-Mg/Pi carrier protein SLC25A41; small
                     calcium-binding mitochondrial carrier protein 3-like;
                     calcium-independent mitochondrial carrier protein
                     SCaMC-3L"
                     /codon_start=1
                     /product="calcium-independent mitochondrial carrier
                     protein SCaMC-3L isoform 1"
                     /protein_id="NP_780542.1"
                     /db_xref="CCDS:CCDS37668.1"
                     /db_xref="GeneID:103775"
                     /db_xref="MGI:MGI:2144215"
                     /translation="MGVHLEVLDTGEQLMVPVDVLEEENKGTLWKFLLSGAMAGAVSR
                     TGTAPLDRARVYMQVYSSKSNFRNLLSGLRSLVQEGGVRSLWRGNGINVLKIAPEYAI
                     KFSVCEQSKNFFYGVHSSQLFQERVVAGSLAVAVSQTLINPMEVLKTRLTLRFTGQYK
                     GLLDCARQILERDGTRALYRGYLPNMLGIIPYACTDLAVYELLQCLWQKLGRDMKDPS
                     GLVSLSSVTLSTTCGQMASYPLTLVRTRMQAQDTVEGSNPTMQGVFKRILSQQGWPGL
                     YRGMTPTLLKVLPAGGISYLVYEAMKKTLGVQVLSR"
     exon            82..237
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     exon            238..390
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     exon            391..498
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     exon            499..666
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     exon            667..814
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     exon            815..1226
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1209..1214
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /note="hexamer: AATAAA"
     polyA_site      1226
                     /gene="Slc25a41"
                     /gene_synonym="4933406J04Rik; SCaMC-3L"
                     /note="major polyA site"
ORIGIN      
        1 agctgggagc cagatagacg ccccagagga cgctgagact gggaccttaa tccttcagca
       61 actatgggag tccatctcga ggttctggac acgggagagc agctgatggt ccctgtggat
      121 gtcttggaag aggaaaacaa ggggaccctg tggaagtttc tgctctctgg agccatggct
      181 ggggcagtgt ctcgcacagg gacagcacct ctggacagag ccagggtgta catgcaggtg
      241 tactcctcca agagcaactt cagaaacctg ctgagtggac tgcggagcct ggtccaggag
      301 ggcggcgtcc gctccctctg gcggggcaat ggcatcaacg tgctcaagat cgccccagag
      361 tatgctatca agttctctgt ctgtgagcag tctaagaatt tcttctacgg tgtgcactca
      421 tcccagctct tccaggaacg ggtcgtcgca ggctccctgg ctgtggccgt ctcccagacg
      481 ctcataaacc ccatggaggt actcaagact cggctgaccc ttcgcttcac tggccagtat
      541 aaagggcttc tggactgtgc caggcagatc ttggaacggg atggtacccg agccctatac
      601 cgaggctacc tgcccaacat gttgggcatc atcccctatg cttgcaccga cctagctgtt
      661 tatgagctac tccagtgcct gtggcagaag ttgggcaggg acatgaagga ccccagtggc
      721 ctcgtcagcc tgtcatctgt aacactgtcc acgacctgtg gccagatggc cagttaccca
      781 ctgactttgg tgcgcacaag gatgcaggct caagacactg tggagggctc caaccccacc
      841 atgcagggag tcttcaagag gatactgagc cagcagggct ggccggggct gtacagaggc
      901 atgacaccca ctttactgaa ggtgttgcca gcaggcggca tcagctacct ggtgtatgaa
      961 gccatgaaga aaaccctggg tgtacaagtc ctgagcagat gacctgccct gaacaagaag
     1021 agaatggaag acccagtgtc cctgagtctc aaaaagcact ccaaggctca ggctttaagg
     1081 ccattttggt ttgcaaaaac cacccaggac tcggattaga aaagcgctgg gagtcctcca
     1141 attgggattc tgagttggga ttccagccgg gtttttgcag gcttgttcaa gagaagatgc
     1201 agacaatgaa taaagatagt tttgga
//
