LOCUS       NM_001025573            2172 bp    mRNA    linear   ROD 18-FEB-2025
DEFINITION  Mus musculus solute carrier family 23 member 4 (Slc23a4), mRNA.
ACCESSION   NM_001025573 XM_145241 XM_914324
VERSION     NM_001025573.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Terada,K., Watanabe,T., Yasuno,N., Ohtsubo,T., Shibata,S.,
            Ichida,K. and Hosoyamada,M.
  TITLE     Pseudogenization of the Slc23a4 gene is necessary for the survival
            of Xdh-deficient mice
  JOURNAL   Sci Rep 15 (1), 3250 (2025)
   PUBMED   39863758
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2172)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC075651.1 and AC153869.7.
            
            On Dec 31, 2009 this sequence version replaced NM_001025573.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075651.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1222              BC075651.1         1-1222
            1223-1226           AC153869.7         208641-208644       c
            1227-2172           BC075651.1         1227-2172
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 15.2 cM"
     gene            1..2172
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /note="solute carrier family 23 member 4"
                     /db_xref="GeneID:243753"
                     /db_xref="MGI:MGI:1917272"
     exon            1..194
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            195..352
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            353..512
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     CDS             405..1373
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /codon_start=1
                     /product="uncharacterized protein LOC243753"
                     /protein_id="NP_001020744.2"
                     /db_xref="CCDS:CCDS19998.1"
                     /db_xref="GeneID:243753"
                     /db_xref="MGI:MGI:1917272"
                     /translation="MLSLPAWKCPEWTLNASQVNTSSPEFIEEWQKRIRELQGAIMVA
                     SCVQMLVGFSGLIGFLMRFIGPLTIAPTISLVALPLFDSAGSDAGIHWGISALTIFLI
                     VLFSQYLKNVMVPVPVYGRRKKCHISRFNLFQVFPVLLALCLSWLFCFVLTVTNTLPE
                     SPTAYGYMARTDTKGSVLSQAPWFRFPYPGQWGLPTISLAGVFGIIAGVISSMVESVG
                     DYHACARLVGAPPPPKHAINRGIGIEGLGCLLAGAWGTGNGTTSYSENVGALGITRFC
                     TSSCTRLLPFWPRLDHHRDEVGVSQLTLCSQTSSGNHLWSATETKM"
     exon            513..694
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            695..815
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            816..972
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1226
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     exon            1227..2159
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2130..2135
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /note="hexamer: AATAAA"
     regulatory      2134..2139
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /note="hexamer: AATAAA"
     polyA_site      2147
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
     polyA_site      2159
                     /gene="Slc23a4"
                     /gene_synonym="2010107G12Rik; Gm468"
                     /note="major polyA site"
ORIGIN      
        1 ggctcagtga gacaacagga gtgggagctg cccattaagg aagacctgga gatttatttc
       61 tgacacgtta ctctcccgtt gtctccacct gtatggttag atgtggagct gtgccctgag
      121 gaggaggagg aagaggggta caagggatag atacatagaa acggtcatcc tggtattgtc
      181 atctaaggca cttgcacttc ctcacagccc tggggggcct cgtggctgtg ccactcatcc
      241 tggccaagga cctgtgcctg cagcatgacc ctctgaccca aagctacctc atcagcacca
      301 ttttcttcgt ctcaggcatc tgcaccctct tgcaagtgtt tttaggggtc aggctgccca
      361 ttcttcaagg agggaccttt gcctttgtgg ctccctctct ggccatgctc tctcttcctg
      421 cctggaaatg cccagagtgg actctcaatg ccagccaggt gaacaccagc tctcctgaat
      481 tcatcgagga gtggcagaag aggatccgag agctgcaggg cgctatcatg gtggcttcct
      541 gtgtccagat gctagtgggt ttctcgggcc tcatcggctt tctcatgcgc ttcatcggcc
      601 ccttgaccat cgcgccgacc atttccctcg tggccctgcc tctctttgat tctgcaggca
      661 gtgatgctgg gatccactgg gggatttctg ccctgaccat cttcctcatc gtgctctttt
      721 ctcagtacct caaaaatgtc atggttcctg tgccagttta tggaagaagg aagaagtgtc
      781 acatctccag gttcaacctg tttcaggtct tccctgtact gctagctctg tgcctctcgt
      841 ggctcttttg cttcgtgctc actgtcacca acaccctccc tgagtccccc acggcatatg
      901 gatacatggc ccgtacagac accaaaggca gcgtcctgag ccaggccccc tggttccgct
      961 tcccttaccc agggcagtgg ggcctcccca ccatcagcct ggctggagtc tttggaatca
     1021 ttgctggagt gatctcctcc atggtggagt cggtgggcga ttatcacgcc tgtgctcggc
     1081 tggttggtgc cccaccccct ccaaaacatg ccatcaaccg tggcattggc attgagggcc
     1141 ttggctgcct gctggcaggg gcctggggaa ctgggaatgg taccacgtcc tacagtgaga
     1201 acgtcggggc gctgggcatc accaggttct gcacatcttc atgtacccga ctcctcccct
     1261 tctggcccag gctagaccac cacagagacg aggtgggagt gagccagctc actctgtgtt
     1321 cccagacctc ctctggaaat cacctgtgga gtgctacaga aaccaagatg tgaatagaat
     1381 gcacattcca cgcctccccc caaccttctc atagccaaac tctggcctgc aaaatgcaaa
     1441 gatctatgtt cacaaatagt cacacaaggg tccttcccag gaccttccac acctggatac
     1501 cgtggtggcc aaacagtgtt gatgaagagc ataatcagta tggagctggc cccagggcat
     1561 ccttctactg tctcctggct ccagagtgga cgaggggtct gggatctcca ctatttccca
     1621 gggagaatca ggcttaggtc ttcaaatttt gataggctct gagtcatatg agccagggaa
     1681 aggacctctc ccaaccctac tttagacaac aggaactctt tttgcttgac caaacccact
     1741 ttcaaaagaa agaagcttgc tcttcgacaa tgctcagcaa tattctggtg gatcaggagg
     1801 aggaggcgtg ctgtggaaca ggggcgggct gtttgctgaa agctgacgag gccaggcagc
     1861 ctttaaggct agctgggcgg cttggcaaga tcctgtctca aaatttaaaa aaaaagtaaa
     1921 aagcaagcta gggatgctgg agagttggct ccatggttaa gaacactagt ttttgctgag
     1981 gatcccagtt caattcccag tacccacatg gtggctcaca accatcccca gctgcagttc
     2041 caggggatct gacaccctct tctgacctct gtaccaggaa catatgtggt gcacagatgt
     2101 acatgtaagc aaaacactca tatacataaa ataaataaat ctttttttaa aaaaacaaaa
     2161 aaaaaaaaaa aa
//
