LOCUS       NM_001347426            2195 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus solute carrier family 22. member 29 (Slc22a29),
            transcript variant 2, mRNA.
ACCESSION   NM_001347426 XM_006527059
VERSION     NM_001347426.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2195)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2195)
  AUTHORS   Wu,W., Baker,M.E., Eraly,S.A., Bush,K.T. and Nigam,S.K.
  TITLE     Analysis of a large cluster of SLC22 transporter genes, including
            novel USTs, reveals species-specific amplification of subsets of
            family members
  JOURNAL   Physiol Genomics 38 (2), 116-124 (2009)
   PUBMED   19417012
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC110913.13.
            
            On Nov 26, 2016 this sequence version replaced XM_006527059.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF536195.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-629               AC110913.13        41931-42559
            630-733             AC110913.13        42964-43067
            734-888             AC110913.13        53413-53567
            889-1057            AC110913.13        53657-53825
            1058-1178           AC110913.13        67310-67430
            1179-1294           AC110913.13        90786-90901
            1295-1509           AC110913.13        91462-91676
            1510-1618           AC110913.13        98074-98182
            1619-1748           AC110913.13        99200-99329
            1749-2195           AC110913.13        100217-100663
FEATURES             Location/Qualifiers
     source          1..2195
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.4 cM"
     gene            1..2195
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /note="solute carrier family 22. member 29"
                     /db_xref="GeneID:236293"
                     /db_xref="MGI:MGI:3605624"
     exon            1..629
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             228..1700
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="solute carrier family 22. member 29 isoform 2"
                     /protein_id="NP_001334355.1"
                     /db_xref="CCDS:CCDS84413.1"
                     /db_xref="GeneID:236293"
                     /db_xref="MGI:MGI:3605624"
                     /translation="MSFQELLNQVGSLGRFQILQIVFLFLLNAIVVPHIGMENFTAAI
                     PNHRCWVPILDNDTASDNGSRILSQDDLLRISIPLDSNLRLDKCRRFAQPQWHLLHLN
                     GTFSNVSEPDTEPCVDGWVYDRSNFLSTIVTEWDLVCESQALNSVTKFSFMIGLFIGG
                     IICGHLSDRFGRKFILTCALLQFAITETCVAFAPSFFIYCSLRFLAGMSVEPISVNSH
                     LLMLEWTSPKFLAMMAVLSSCAPNIGFMILAGLAFLFRIWHHLQLTMSAPIFFFLILT
                     RWLSESARWLILINKPQKGLKELRKVAHMNGMKNSGDLTMEIVRTSMKAELEAAKTKP
                     SLRDLFHTSILRKRICVLSFIRLFFTVSIIGLAVHLQHLSSNIILLQFLISALAILVS
                     VIGPFVLNHIGRRITYLVLMSLRGIFIMIAVFVPQEMQTLRIIMATLAGGISSLCVGV
                     SHLHTNELLPTTLSDILCQLALDLLWRLLHLQCVYCVSPS"
     exon            630..733
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            734..888
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1057
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1178
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1294
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1509
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1618
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..1748
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..2195
                     /gene="Slc22a29"
                     /gene_synonym="D630002G06Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attagtaaaa tgcttactga ctttaaaata ataggctcca tacctaacat ttagctcact
       61 agagggtaat gcgactctga cagcaatgca gaagggacac atgaagaaca gctcaggatc
      121 aacactattt aaggtgcctt tgtgaaacat aattttttaa tgctttgtac caatattttt
      181 ttacagtaaa gtctttgtct ccctttggaa atagttattc aacctcaatg tcctttcaag
      241 aactcctgaa tcaagttgga agcctaggaa gattccagat ccttcagata gtttttcttt
      301 tcctcctcaa tgccattgta gtaccacata ttggaatgga gaactttact gcagccattc
      361 ccaatcatcg ctgctgggtc cccatccttg acaatgacac tgcctctgat aatggcagta
      421 ggatactgag ccaagatgac ctcctgagga tctccatccc cctggattcc aacctgagac
      481 tggataaatg tcgtcgtttt gcccaaccac agtggcatct tcttcatttg aatggcactt
      541 tctccaatgt gtcagagcca gacactgagc cctgtgtgga tggttgggtg tatgacagga
      601 gcaacttcct ttctaccatt gtgactgagt gggacttggt atgtgaatct caggcactga
      661 attctgtcac taaattttca ttcatgattg gcctatttat agggggtatc atatgtggcc
      721 atctgtcaga caggtttggg aggaagttca ttttaacatg tgctttatta caatttgcca
      781 tcactgaaac ctgtgtagct tttgctccct ccttcttcat ctactgctca cttcgattcc
      841 tggcaggaat gtctgtggaa cccatatcag taaatagtca cttgctcatg ttagaatgga
      901 caagccctaa attcctagcc atgatggcag tgctttcatc ttgtgctcct aatattggat
      961 tcatgatatt ggcaggactg gcttttctat ttagaatctg gcatcacctc cagctgacaa
     1021 tgtctgcgcc aatattcttc ttccttatac tcacaaggtg gctgtcagag tcagctcggt
     1081 ggctgatttt gatcaacaaa ccccagaagg gattaaagga acttagaaaa gttgcacaca
     1141 tgaatggaat gaagaattct ggagacctaa ccatggagat tgtgagaaca agtatgaagg
     1201 cagaacttga ggcagcaaag actaaacctt ctctaagaga tttgttccat acatccatcc
     1261 tacgtaagcg gatatgtgtc ctgtccttta taagactttt ctttacagta tcaattattg
     1321 gcctggcagt tcacctccag cacctgagtt ctaatattat cctgttgcag tttctcatta
     1381 gtgcattggc catactagtc agtgttattg gaccttttgt acttaatcac attggccgta
     1441 gaataaccta tctggttctc atgtctctga ggggaatctt cattatgatt gctgtatttg
     1501 tacctcaaga aatgcagacc ctgcgtatta ttatggccac attggcagga ggaatttctt
     1561 ctctatgtgt gggtgttagt catcttcata caaatgagct actcccaacc acactaagcg
     1621 acatactatg ccaacttgcc ctggatcttc tatggaggct tctccatctt caatgcgttt
     1681 actgtgtttc tccttcctga aaccaagaat cagcctcttc ctgactccac ccatgatgta
     1741 ggaaatgatt ggaaagaatc aagaaaagga aagagggagg atcccatcat taaagtcaca
     1801 aggttgtaag gaactcttgg aattgtcatc tgatcaaaga ataagagaag aaaatggtat
     1861 tcagaacatg gtgacgattt tcccaggatc attactcaga agtattcact gatattatca
     1921 aaagtattaa taactcaaga taaaatagaa aactgatcac ataggaattg ctgcaatcga
     1981 ttactatatg ttaaatacct atgagtaatc acgtaggaga tttgaagaat tggaaagaac
     2041 attaaaagat ttgaaaagta cattgaaaaa atcatacttg actatttttg caatcatgta
     2101 catctgtttt gttttgggat ggtatatcta ttctattttt ccacttctgt gatataatac
     2161 ctgaggaaat aaaaagaagt tatccttttt ccacc
//
