LOCUS       NM_001039371            6641 bp    mRNA    linear   ROD 18-JUN-2024
DEFINITION  Mus musculus solute carrier family 22 (organic anion/cation
            transporter), member 15 (Slc22a15), mRNA.
ACCESSION   NM_001039371 XM_001002464 XM_001474615
VERSION     NM_001039371.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6641)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6641)
  AUTHORS   Nayak,D., Weadick,B., Persaud,A.K., Raj,R., Shakya,R., Li,J.,
            Campbell,M.J. and Govindarajan,R.
  TITLE     EMT alterations in the solute carrier landscape uncover
            SLC22A10/A15 imposed vulnerabilities in pancreatic cancer
  JOURNAL   iScience 25 (5), 104193 (2022)
   PUBMED   35479410
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6641)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 6641)
  AUTHORS   Yee,S.W., Buitrago,D., Stecula,A., Ngo,H.X., Chien,H.C., Zou,L.,
            Koleske,M.L. and Giacomini,K.M.
  TITLE     Deorphaning a solute carrier 22 family member, SLC22A15, through
            functional genomic studies
  JOURNAL   FASEB J 34 (12), 15734-15752 (2020)
   PUBMED   33124720
REFERENCE   5  (bases 1 to 6641)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165165.3.
            
            On Oct 1, 2009 this sequence version replaced NM_001039371.1.
            
            Sequence Note: This RefSeq record was created from  genomic
            sequence data because no single transcript was available for the
            full length of the gene. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422600.302307.1,
                                           SRR17784650.156796.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-422               AC165165.3         187690-188111       c
            423-635             AC165165.3         178963-179175       c
            636-768             AC165165.3         161595-161727       c
            769-933             AC165165.3         160768-160932       c
            934-1063            AC165165.3         147118-147247       c
            1064-1279           AC165165.3         143667-143882       c
            1280-1420           AC165165.3         141528-141668       c
            1421-1506           AC165165.3         139305-139390       c
            1507-1627           AC165165.3         128148-128268       c
            1628-1700           AC165165.3         126563-126635       c
            1701-1889           AC165165.3         124459-124647       c
            1890-6641           AC165165.3         119426-124177       c
FEATURES             Location/Qualifiers
     source          1..6641
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 44.3 cM"
     gene            1..6641
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="solute carrier family 22 (organic anion/cation
                     transporter), member 15"
                     /db_xref="GeneID:242126"
                     /db_xref="MGI:MGI:3607704"
     exon            1..422
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            423..635
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            636..768
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            769..933
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1063
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1279
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1420
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1421..1506
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1627
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1700
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1701..1889
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1890..6641
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2464..2469
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2485
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="major polyA site"
     regulatory      3444..3449
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3463
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="major polyA site"
     regulatory      4547..4552
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4573
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
     regulatory      5186..5191
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5206
                     /gene="Slc22a15"
                     /gene_synonym="2610034P21Rik; 4930477M19; A530052I06Rik"
ORIGIN      
        1 gctcgccaaa aattcctgtc acttctgaca ggaagcgggg aggccgcgcc ggggcgacca
       61 gcatcgcatc tccgccgcga ccccggaccc ggtcgtctgc agggtcccgc ctgcgcctgg
      121 gccccagccc cgcccggttc tccacccccg gctcggccca gtcctctgtc cccgcctcgg
      181 ccgcggtccg cccggtcctc cttcccggtc cctgccgctc ggccctccgt ccccgcccgg
      241 ctcagtcctc ggtcgctccg tcgcccgatc ttcagccacc gcgcagccag gtcctccgtc
      301 gcggtggcgg ccgggtcctc gggcgcgagc ccgccatgga ggtggaggag gcgttccagg
      361 cggtgggcga gatgggcctc tatcagatgt acttgtgctt cctgctggct gtgctgctgc
      421 agctttatgt ggccacagaa gccatcctca ttgcactgat tggagctaca ccagcatacc
      481 actgggacat ggccgatctc ctgcccaacc agagccacag caaccagact ttgggcaaag
      541 gccaggcctt cggggactgg ctgctgaccg ccaatggcag tgagatccat aagcacgtgc
      601 atttcagcaa cagtttcacc tctattgcct ctgagtggtt tttaattgcc aaccgatctt
      661 acaaagtcag cgcggccagc tcctctttct tcagtggtgt gtttgttggt gttatctcct
      721 ttggtcagct ttcagatcga tttggaagga gaaaagtcta tctcacaggt tttgctcttg
      781 acatcttatt tgctgtcgca aatggatttt ccccctcata tgaattcttt gcagtaactc
      841 gcttcttggt gggcatgatg aatggaggga tgtccctggt ggcctttgtc ttgctaaatg
      901 agtgcgtggg caccgcctac tgggcacttg caggatcgat tggtggtctc ttcttcgctg
      961 ttggcatcgc gcagtatgcc ctattagggt acttcatccg ctcctggagg accctagctg
     1021 ttctggtcaa ccttcaggga acattggtct ttctcttatc tttattcatt cctgaatcac
     1081 ctcgttggtt atactcccag ggtcggctga gtgaggcgga agaggctctg tacttcattg
     1141 ccaagaggaa ccgcaagctc aagtgtacat tctcactaac acacccggcc aacaggagct
     1201 acagggcaac tggaagcttc ctggatcttt tccgttaccg gatcctccta ggacataccc
     1261 tgatcctgat gttcatctgg tttgtgtgca gcttggtgta ctacggcctc accctgagtg
     1321 caggtgacct agggggcagc atttatgcca acctggctct atctggcctc atagagattc
     1381 catcctaccc tctctgcatc tacctgatta accaaagatg gtttggtcgg aagcggacac
     1441 tagcagcgtt tctgtgcctt ggaggactgg cctgtcttat tgtgatgttt cttccggaaa
     1501 agaaagacac aggcgtgttt gcagtggtca acagccattc cttgtccctg ctggggaagc
     1561 tgaccatcag tgctgccttt aacattgttt acatctacac ctctgagctg taccccactg
     1621 tcatcagaaa cgttggcctg ggagcgtgct ccatgttctc ccgagtcggt gggatcattg
     1681 cccccttcgt cccctccctg aaggaagtac agtggtctct gcccttcatc gtgtttggag
     1741 ccacaggcct gacctcaggc ctcctgagcc tgctattgcc agagactctg aacagccctt
     1801 tgctggagac attttctgat cttcaaatgt actcatatag gaggttagga gaggaagcgc
     1861 tatctctaca gaccttggat cctccacagc ccctggacaa ggtcagcagt gagagtgagg
     1921 aggaggaaga gttctatgat gcagatgagg agacccagat gatcaagtga agagcccgca
     1981 ttcctgccca gaagcagagc cccatcatcc ttagtgcctc agcttcagca ccagagatgt
     2041 attcagccca cactgacgct ttccagatgg gagaggcggt ggaggagaga ttccaaaagg
     2101 gagaacttgc tgcgttgagg gagtcattgc tgacttgttc gggactgggg ctgagctcag
     2161 caccacgcct ctggctgcac agctcagatc caccttgtag gactggtgcc tcatgctgct
     2221 acccttcctc gggacctaag agcaggtgtg tgaaactgct cgcactttaa ctagggttag
     2281 ccagaccttc cccgagatgt catcttccta gcaagcatcc ctgtcacttg cttctccccc
     2341 accaggaatc ttctggtgca ggttgatgtg tacagagctc ccagcttccc atcagctcat
     2401 tggctggttc ccagctcatt ggttgctggt gcagcttgtg cctttagtct gtgctcattc
     2461 actaataaag ggcagaatta gcggagcatt tctcatcaga gggctggctg tggcagggaa
     2521 gctccctttg acgcttgcgt catgcgattt ttttccccca cttggatgca tttggggact
     2581 gtttttcttt gtgagattct agcatcagca ataacttcaa aatcatgccc agccaacgag
     2641 gaaactttac agactgaggg tggcgagcaa gtgacacgct aagcactttg taaatgactt
     2701 aagaggggag agtctctcac agtgtcgtca gtgtgcaaca agggacatgc acagcacacc
     2761 agggctggac tctgccctgc atcagcctct actggttatt taaaaggcag ggtggagggt
     2821 tttttgtttt ttaagaaaat ggtgggtttt cattgagtgc ttccgtggat ttccaaatga
     2881 atcataacct gtctctcaca aaacttgaac actctcaaat ggcatataag ccaggagtcc
     2941 acatgtgggc aatcgatcaa tcgatcacgc cccgaccagg gaaacggctg tgtgtttagg
     3001 atttctgtgt ctgctaatct cttgggagta gaaagcacac agagtagaaa ggtgctctgt
     3061 agatgcccct ggaaactgtg caagcctgca ttctttgcct ccagctatgt tcctggactc
     3121 ctctgtgttg tctgggcttt tactgtactg gtctgttcca ctgttaaata atttttcctt
     3181 tgtgcccttg ggtatggagg agctgtttct accagtatga ggaacatgcc tggccgggat
     3241 gctgtgaaga ccccataggt gatcctgtgt ctagctgtca gaaagattat agaactccct
     3301 gcgacatcat atccgcaaat tccagtaaag ggtgtcccac actccaaagc acgaagtcct
     3361 gctgctctcc tctctgggaa atggaggtca gctctcctta ggagaggaag aaaaggactt
     3421 ccagaaactc ttgattcttg tcaaataaag tatttaaaat aaagcagtaa atttatatat
     3481 atatatatgt atatatatat aaattttata tatatatata tataaatgtt attgaactct
     3541 ttttatataa tgtaacctgt aggagtatta tttttaatat atccctacac aaggttgttt
     3601 cccacctcaa tggtttttgt tcccaaatga aagacacaca cacaaccttt atattttaat
     3661 atgctttaag gagcacaata gctggtcaac tgcctaccct ccatggtgtt agactctacc
     3721 tcccaccgat aattccaagt tactacttac tagttcctat gttccatctt ggctgcccct
     3781 gacctttaca cggtagctct gcctctctgg ccctcactct caggcagtgc tgctctgctc
     3841 ttcctcctcc tccaggtccc aagccctgga aaccccaatc ctctttcttg tctccccaac
     3901 tattagctgc tggcatcttt aattaccaat cacagttaac tgggggcagg tccccagaag
     3961 ctacatgcag accctcttgt gcaaacagtt ttgaggggat acagttaata tagaatacaa
     4021 agagctacaa taacccatca gagaaaattt ggtactagaa gttagaaagt gcatccgtca
     4081 gtctagctgc agaagaagca gggccatggc tttttattca ttccctgctg ctgctgaagt
     4141 tcctgccgct tctggctaag caagtgaact ccaggtaatt cccagcctag aggtagaagg
     4201 acagaccaca gggtgaatta cgtggcaagt aataaggccc ggttggctgt cagctgctct
     4261 tgttggataa attattacat ttttcttctc cctgggtagt cctctaagca cagtttaata
     4321 attatttctc tgcctttgta aagatgaatt ttattcccta tgatggctgc taatgagtat
     4381 tgatggtaca aagccacaga agtcttactt ggtaggtagc ctattttgct tgtacagata
     4441 gtctgttaaa agcatcttta aagaaacagt aaggatgtct gaaaagtcat aaggtatcat
     4501 actactaact acctaaaata cctaaataca tggaaatcaa tgaataaata aacacatgga
     4561 gtttaaataa gaatttcccc tttgagctga caagagtcgt aactaacaag tccaacacca
     4621 gtctgagaaa aatttggggg agaacattaa ccttaatttt taaccttaaa agtgacaaga
     4681 atgttcaaag ctaccgtgct tcagtttcag atgctgtgtt gaaaccacag ccacagcatg
     4741 gcttctggtc ttcagcggct ccagagcaag ggagatgttc ttcaattctc agcatgaaca
     4801 caaaatacaa gaagagtata gtatctgggg cactggcggg tgactgtggc caggataggc
     4861 accgtccagt ttagtgcaca atttatactc ttagtgcaca catgttcaag taactgtcat
     4921 gtaaaatttt ggaactgaaa ttccactttt cagtaggact tcttcctaca ggtagttgat
     4981 cgttggtcct tagtttgcaa aggtaacaaa gatcagggta ttttattaac taaataaaac
     5041 caggaattag ggagctggag agatggctca gtggtcctga gttcaattcc cagcaaccac
     5101 atggtggctc acaaccatct gtagtgagat cccataccct cttctgatgt gtctgaagac
     5161 agctacagtg tactaacatc aaataaataa atcttataaa caaacagcca ggcgtggtgg
     5221 cgcacgcttt ttatcccagc actcgggagg cagaggcagg cgggtttctg agttggaggc
     5281 cagcctggtc tactgagtga gttccagggc agccagggct acacagagaa accctgtctg
     5341 gaaaaaacaa aaaacaaaaa caaaaacaaa acaaaaaaca aacaaacagg aattaatgcc
     5401 tgccctttgt gaatttacta aaggatcaca gaatacagtc cttttgttca tatagagtac
     5461 attaggagta cagtaacaac tttgacaaat gaagaaccta ctagaagtca ccagtgatct
     5521 gtgagatgga ttgtaacaag taacaagtca gggacttaaa aagaacccag gagaacagtg
     5581 ttgcagaata caaagatggt gcaattctgg aaaattcatg catggggtac atcagaggag
     5641 aaagattcat gacacttcag tgagcacagc attcaatact catgccaaat taaagctacc
     5701 aacagactaa gaatacagga aacactaacg aaatggctca gacttaagct cagtttaatg
     5761 cctgggcccc gtataacaga agtggagaac tcattcccgt atatgtccta ggacttccac
     5821 aaaagcttcc ttagtgaaat aagaggtgtg atgtagatat ggtgagtggc acacagcatc
     5881 tgcatctcct ggaaccatag tctgcggact acttgatcct gatccacagt taatattgtt
     5941 atggatcctg gtctacaaag tgagttccag gacagccagg gctgttacac agagaaatct
     6001 taaaaaaaaa aaaaaaaaaa gcaaaaccaa aaatcaacaa caaaaaagac aaaactgtta
     6061 tggagccaac aggacaacgg gtcagtgggt aaagacactt gcagtgccaa tgcgagcctg
     6121 gtgccttagt ttggtcccca gagcccacat aaaagtggga ggaaggaact gactccacac
     6181 ttctttttat ctgtctccac acatgcattg tggtatgcac atgcccacac acatatatct
     6241 tacacacaca caccagatac acaatatttc taaaaatgta tttatgtgtg cctgtgtatt
     6301 tctgtgtgag gagaccagaa gttgatgttg aacatttttc actattgctc tccacataat
     6361 tttttgagac agtctctcat ggaatctaga gcgctccgtt ctggctagac tggctggcca
     6421 gggaggctcc aagacccacc ggcttccact cctgagcact gatgctaaag atgatgttac
     6481 tgctgcatcc agcttttaca tggatcctaa ttgaggtcct catatttgca taggaggctc
     6541 tttacacatt gaaccagttc ctcagcctaa gaaatgcttt tatatattct ctccccttag
     6601 agatatgtaa aatatcttaa ataaataaaa tataataaaa a
//
