LOCUS       NM_025807               3563 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus solute carrier family 16 (monocarboxylic acid
            transporters), member 9 (Slc16a9), mRNA.
ACCESSION   NM_025807
VERSION     NM_025807.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   DeSisto,J., O'Rourke,R., Jones,H.E., Pawlikowski,B., Malek,A.D.,
            Bonney,S., Guimiot,F., Jones,K.L. and Siegenthaler,J.A.
  TITLE     Single-Cell Transcriptomic Analyses of the Developing Meninges
            Reveal Meningeal Fibroblast Diversity and Function
  JOURNAL   Dev Cell 54 (1), 43-59 (2020)
   PUBMED   32634398
REFERENCE   3  (bases 1 to 3563)
  AUTHORS   Nagai,A., Takebe,K., Nio-Kobayashi,J., Takahashi-Iwanaga,H. and
            Iwanaga,T.
  TITLE     Cellular expression of the monocarboxylate transporter (MCT) family
            in the placenta of mice
  JOURNAL   Placenta 31 (2), 126-133 (2010)
   PUBMED   20022372
  REMARK    GeneRIF: In situ hybridization survey of MCT subtypes in placenta
            detected intense mRNA expression of MCT1, MCT4, & MCT9 (gestational
            day 11.5 through day 18.5).
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC122923.4.
            
            On Apr 29, 2007 this sequence version replaced NM_025807.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004556.1, AK004684.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               AC122923.4         139337-139439       c
            104-336             AC122923.4         128523-128755       c
            337-480             AC122923.4         117480-117623       c
            481-576             AC122923.4         109694-109789       c
            577-1485            AC122923.4         101518-102426       c
            1486-3563           AC122923.4         98764-100841        c
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 36.68 cM"
     gene            1..3563
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /note="solute carrier family 16 (monocarboxylic acid
                     transporters), member 9"
                     /db_xref="GeneID:66859"
                     /db_xref="MGI:MGI:1914109"
     exon            1..103
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            104..336
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..1667
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /note="MCT 9; solute carrier family 16 member 9"
                     /codon_start=1
                     /product="monocarboxylate transporter 9"
                     /protein_id="NP_080083.2"
                     /db_xref="CCDS:CCDS23913.1"
                     /db_xref="GeneID:66859"
                     /db_xref="MGI:MGI:1914109"
                     /translation="MEFQKSPDGGWGWVIVVVSFFTQFLSYGSPLAVGVLYVEWLDAF
                     GEGKGKTAWVGSLASGVGLLASPVCSLFVSSFGARPVTIFSGFLVAGGLMLSSLAPNI
                     YFLFFSYGIVVGLGCGLLYTATVTITCQYFDSRRGLALGLISTGSSVGLFIYAALQRM
                     LIEFYGLDGCLLIVGALALNILACGSLMRPLQTSDCPFPEKTAPENVPDRYSMYNEKE
                     KNPEETMNFQDKGYSSEDKCLPNGDWGRETSLPKSLAIAAHTKEPETYKKKVVEQTNF
                     CKQLAKRKWQLYRNYCGETASLFKNKVFSALFIAILLFDIGGFPPSLLMEDVARSYHV
                     REEDLTMPLISIFGIMTAVGKLLLGILADFKWINTLYLYVATLIITGLALCAIPFAKS
                     YVTLAILSGILGFLTGNWSIFPYVTTKTVGIDKLAHAYGILMFFAGLGNSLGPPIVGW
                     FYDWTQTYDIAFYFSGFCVLLGGFILLLAILPCWDMCNKKLPKPAVPTTFFYKVASNV
                     "
     exon            337..480
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            481..576
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            577..1485
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1486..3563
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2722..2727
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2748
                     /gene="Slc16a9"
                     /gene_synonym="1200003C15Rik; 4930425B13Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggccgtatat tgcgcgcagc gggactgctc gcccagcgca gggcccggat cagcagctgc
       61 ggccggagct gcgcccgcgg ccccagccga ggccgggact cagagccttc ggcgaaccac
      121 cgcgttgatt tcatctcaca atggaatttc agaagtcacc tgacggaggg tggggctggg
      181 tgattgtggt tgtctccttc ttcacccagt tcctctctta cggatccccg ttagctgttg
      241 gggtcttgta tgtagaatgg ctggatgcct tcggtgaagg aaaaggaaaa acagcttggg
      301 tgggatccct ggcgagcgga gtcggcttgc ttgcaagtcc tgtgtgcagt ctcttcgtct
      361 catcttttgg agcaagaccc gtcacaatct tcagtggctt cctggtggct ggcggtctaa
      421 tgctgagcag tcttgccccc aatatctact ttctgttttt ttcctatggc atcgttgtag
      481 gtctcggatg tggcttatta tacacagcga cggtgaccat cacatgccag tattttgaca
      541 gccgcagagg cctcgccctc ggcctgattt caacaggttc gagtgtgggt ctattcatct
      601 acgcagctct gcagaggatg ctgattgaat tctatggcct agatggctgc ctgctcatcg
      661 tgggcgcttt agctttaaac atcctagcct gtggcagcct gatgaggccc ttgcaaacct
      721 ccgactgtcc ttttcctgaa aagacagctc cagagaatgt tccagacaga tactccatgt
      781 ataacgagaa agagaagaac ccagaggaga ctatgaactt ccaagacaag ggctacagta
      841 gcgaagataa atgcttgccc aatggagact ggggacggga gacttccctt cctaaaagcc
      901 tcgccatcgc tgcacacacc aaggagcccg agacgtacaa aaagaaggtc gtagaacaga
      961 ctaatttttg caagcagctt gccaagagga aatggcagct atataggaac tactgtggag
     1021 agaccgcgtc tctttttaaa aacaaagtct tctccgcgct attcatcgcc atcttgcttt
     1081 ttgacatcgg aggatttcca ccatcgctgc tcatggagga tgtcgcgaga agttaccacg
     1141 tgagggaaga agatcttacc atgcctctca tctccatttt cggcatcatg acagccgtgg
     1201 gcaagcttct tttgggcatc ctggctgact tcaagtggat caacaccctg tatctctacg
     1261 tagctaccct gatcatcact ggcctggcct tgtgcgcaat cccctttgcc aagagttacg
     1321 tcacgctggc tatcctttct ggcatcttgg gttttcttac tggtaactgg tctatcttcc
     1381 cgtatgtgac cacgaagact gtggggattg acaaattagc ccacgcctat ggaatactca
     1441 tgttttttgc tggacttggg aacagcctcg ggccacccat agttggttgg ttctatgatt
     1501 ggacccagac ctatgacatc gccttttatt tcagtggctt ctgtgtcctg ctcgggggat
     1561 tcatcctgct gctcgccatc ttgccctgtt gggatatgtg caacaaaaaa ctacctaagc
     1621 cagcagtgcc aaccaccttt ttctacaaag ttgcctctaa tgtttagagg gatattaaaa
     1681 ggccttattt tctctatttt tctactttat accatacagc aatatgtgta tgtatgtatg
     1741 tatgtatgta tgaatgaatg aatattcgta tataacaaat tgttaggcag gttctagagt
     1801 cacaatctta tagcaaaact tctctggctg actctgaagg acaacgcacg ctctgtcttt
     1861 gtgtgccttg tataaccttg attccttgtc ttcccctccc ccacccctcg agaagtggga
     1921 ctgttctgtt ctgttctgtt tcatggttgt tcgttgttca tgagttcaga attagcctcg
     1981 cacagttttc tctggatgaa atttaaagtc tctgctttcc ccgtgagttc tctaaggtgc
     2041 tcagtgggtc ctgtcttaaa ctgtgcgctc ctcacaattg gatttgcgtg aaggagtaat
     2101 ggctgtctcc tcgatgtcag acctgcaaat ccagagaaga caatgagcca tttcatttcc
     2161 ggaaatgaaa gcggttgcaa catcgctgag ctgtcgaaga ccttagacaa gatagtttta
     2221 aatcacagat gtctgacgtc cgttttgttt tactgtgctc gatgaagtac tgtgaggcag
     2281 tttggtgtcc actgccttcg aactcactcg attcctccag cagtccgcct gcatggccgg
     2341 ctcctaggac cttgctcgct ggtgttgatc ggcaaccact ctgctgatgt ctccaaataa
     2401 cctgttggtt tgccggtttc cgccttggaa atagaccttt gaaccattcc gaaatctggc
     2461 caatgggaag cgcccatttg ctttgagcac ctcgagaacg ggttgcaagg ccttgcttgc
     2521 atgtcttcca aatgaagtcc gtggtggttt ctcttgggct tttccactat tgcgtttcga
     2581 tttgtggaca gtgctaaaaa aaaaaaaaat gatgctttcg gtccataaga tgtgggaaag
     2641 gacaaggtaa agagaactcg ctactctcac ccaaccgtat ttaatcccaa gaacaatgtt
     2701 tgagggtgaa aaataatgtt taataaatgg gctttttttt cctctataga aatgggtttc
     2761 aagtttggta tggctggaaa tgccctgtgg aaacttaaat gcgtgctact atgctgcttt
     2821 cctttgcatt attttttgag acagggtttc ttctgcgtag ccttagctga tctgaacttg
     2881 cagtatagac cagcctggcc ttgaactcag atccacctgc ggctgcatcc caagtactgg
     2941 gattaagtag gagtaccttt cctggctagt actgtttttc ttgaataaaa ggaaacaaac
     3001 aaacaaacaa acaaacaaga taaaccatga agtcaggtat tataaaacaa acagccaagg
     3061 gttctttaag taagggctcc ctttctgttg tgccaaaatt ttcctttttt ttttttttta
     3121 atatgtgaaa tgattttgca ggactacatt gccttccttt ggggacacct gaagcacttt
     3181 attacacatc ccggatagca cctcccagag gtacaactgt gtcctgtgtc atcaagtaga
     3241 aagattccat cgcatagtca gtcctgtggc aatgcaataa tggggctcca agcacatgag
     3301 acttgtgttc tacactcaga cttctggaaa gttctttgta cctcattctt cagtctatca
     3361 aagttagtaa ctaaagccta actccagctc caggggatcc ggcaccctct tctgtccccc
     3421 acagccacct gtgtattggt ggaatatata tatatataat atatatatat atatataccc
     3481 ccacacataa ataaaaataa aaaaagatgt ctttaaaatt tagagctatg atttttttta
     3541 agccaaataa ataaataaaa att
//
